NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1001796

Scaffold Ga0272435_1001796


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1001796 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22646
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028667Metagenome190Y
F028978Metagenome189Y
F094624Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100179611F094624N/ALINSSQNLCLNFKLFESLFKNLTFQAXNKLINVKEFIKKMKKLIEHLHDEMLIAQIIYEFHVNLSCRSCSKYFIKDEVXLNACNFSITHLAVKLNDHNVDFFKIKHVFKNNSLVIELNLSVFMKIYSVFHVILLSHIANDSLLSQRQKS
Ga0272435_10017962F028667GAGMLIELKDQRDMTLKLNEQXIDVQVDHIKKLDELEINQMTIDTQEETIIELREKVLSLKKKQRSANQSRSRQSTKSLSRQSIENHTXRELFTLFDNDHHKFFKFLNSSIFTDKDESTXDSXRIKMNDKLQTNVDHFNNENICIVYVISRLEDDAAEHIFTXHXHNASHLYISIDELFEHLKEIYDELNRNQKCHHEYNALRQTDKSFNVFYFNFMKLFNYLDYDNCILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQSVNNKQRVNYQLRSERRTVIVTVIIKVTIVPDKRAATSLSVTTSIIDYVKSTIFSTSESVRSFIICYICKISDHLFKNCFQNKINISTSCAFILRLHEIIISKNKENEKMFSSSKNSEAKN
Ga0272435_10017966F028978N/AMKIADLKKKENDESIYQLILEANKINENCVLLREVVSKDKAQYKDIKLRDCRVQNEILY
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Institute for Fundamental Biomedical Research
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