NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1001852

Scaffold Ga0272435_1001852


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1001852 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22045
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F032102Metagenome180Y
F036036Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100185212F000597N/AMKDVLISSTMSMSDDSFASESLTIKCVLSSNEISYSLKLLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIQEFDNHYAKKLITHVIYSNLTVQDHMIDMTSMLITQLDQHQMILEKT
Ga0272435_100185213F003820N/AMNDLQNKINNRLQNTLSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTIVSDKCIATSLSAMMTLIIEYVKSIIFSISESVRSSIICYICKISDHLFKNCFQNKINILTFHAFILHLHEIIISKNKENEKMFSFSKNSEAKN
Ga0272435_10018524F036036N/AMLISLIHHLFSCFDQSFTSKDQSFIHLFRYILDSIDLQAFANAFILDDVRVEAHMRMKVLVHEKESQEND
Ga0272435_10018526F032102N/AMKIADLKKNNDQSIYKQIFETNEIDENCTLLREAIARDEAQCEDIKLKNCQVQNEILYKDSQL
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Institute for Fundamental Biomedical Research
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