NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1002031

Scaffold Ga0272435_1002031


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1002031 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20515
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (7.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003820Metagenome466Y
F041516Metagenome159Y
F075493Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100203123F041516N/AMTQKVIHIHEVYNSSFKDHKIIHEKENLSNIEKMLHMLRESILVENFNLHHFTXEESFYL
Ga0272435_10020313F003820N/AMKLFNYLEYDDCILMNDLQNKINNHLQNTLSVCSENFTSLTRLRIFLQDVNNKQQVNYQLRSQLRTVIIKVTVISDKCITTSLSVITLIINYVKSTFSSTSESARSSIICYTCKTSSHLFKNCFQNKINTSASYAFTSCLHEIIISKNKKNEKMSFFKDSKTKN
Ga0272435_10020318F075493N/AMXLVXAMHEYMLRCLITSFAVTSQAIHVXNIFKVQINIQIYAFNSDVHCKNAFCFLKIIMHLYHLIAQMQSLCXNYVNVCNVFSVLFSSLISLILVILLYCNAIACXNCCEEEDVSFASXLYLRIFLNEDVQKYYFLDDE
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