NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1002042

Scaffold Ga0272435_1002042


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1002042 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20444
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F023763Metagenome208Y
F028367Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100204212F008169N/ALFTDEKNSTXKNXYGKIQNKLEINVDLFSNERVKLSYVHSRLFNDAAEITQARCEHDCVNLYRIVKDLLKELAQLFNDLNKKVNFCRKYYNLIQESKKFSEFYTQFQRLSFYLDYHEKQLIIDLKDKIHSHLXFIXVDQLVQSDFLKEICFYLIYLNNDQRVIREIKNKLKRVDDVSKTIFHKATVITQSVDHSKSDHLKLRDAILTSVKEADILVESCFVCHKSDHSSKKCFDXLTKINAVNQEYDRFDFNSNFDSKN
Ga0272435_100204213F028367GAGLCKLDEILLKENYFEKSFLINTHLIFQKXSFSLRFLINSDSVIYMIIHFNLVNKVCKKLRIQSIFLTKEKLIKDYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKFXMNKNEILLNMXNDVIVFLNQLNTFISIFSISLNSKHSSXLQSTSFFSITRTKISTMLK
Ga0272435_100204220F023763N/AVIRDYFNRIDKVFELXSSFLKSINNDYKFFIINFVVTLDXVMLLXKVSDXMKNLILIVLKENVFKHIVQSINFYHNLVIXIIMIKNNLESEDFLKNVECNLTFLKLDKEYIFSNEISERDSYSTIVIDESSIKVREI
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