NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1002057

Scaffold Ga0272435_1002057


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1002057 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20337
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F011463Metagenome290Y
F080688Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100205715F011463N/AMKELLNFNHQQLKKTKLIIKVQINKHKRNVTYEVDDXIXLSFRNIKTTRLCKDLKDKQLDSYQITIKVSIFYHLHLSVSMKHLHSMFSLKLLXLYSKDFLSEQHSESLRSITIEDDEHXEIDDILNFRRYXDRIQYKVKXKDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSSKLR
Ga0272435_100205718F008169N/ALKTKFQAKENTSFDFIYFKHSRSQKISDSSLFTDEKNSTXENXYGKIQNKLEINIDLFSNEXVKLSYIHSRLFNDATEITQARCEHDCVNLYRIIEDFLKELAQLFNDSNKKVNFRNEYYNLIQESKKFSKFYTQFQXLSFYLDYHEKQLIIDLKDKIHSRLQFIXVDQLVQFDSLKEIHFYLIHLKDIQRVIREIKNKLKCINDVSKTIFHKVIVITQSVNHLKSDHLKSRDVILTNVKEANILVKSCFIYHKSDHSFKKCLNXFTKINAVNKEYDQFNFDFDFDLKN
Ga0272435_10020572F080688N/AMLQTLMIXAEMHXTTYSDVHQSSNFENLHEKQTVESTTSQLSEHSIEVQLSDHL
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