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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031447 Open in IMG/M |
| Scaffold ID | Ga0272435_1002112 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19966 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (14.29%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.7 | Long. (o) | 159.2 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F004755 | Metagenome | 424 | Y |
| F011463 | Metagenome | 290 | Y |
| F028368 | Metagenome | 191 | Y |
| F033266 | Metagenome | 177 | Y |
| F051591 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272435_10021121 | F051591 | N/A | MLDTIALYLRYQSSHVISLRIVITDLNLLFCTSRKDKTDSDLIRNAVLLXNNIVLCAIFKHKSVXFRFLHQYAVFCAVLKSIDDLFFSCEFALXFINQITVXIDDSFFCVDELSFRRRFXPAXARKFSIFNFXLAMQSSVKLLSRMRACFDRMIVLYNLSIDLIYHMLX |
| Ga0272435_100211210 | F011463 | N/A | MKLIIKVQINKHRXNVTYEVNDXVXLSFRNVKTTRLCKDLKDKQLNFYQITAKINIFYHLHLSVSMKHLHSIFSSKLLXLYSEDSLSEQHSESLRLITIKDDEYXKIDDILNFRCYQDXIQYKVKXKDLDRNDKXYYVNKGKFDDSEKVLNEFHKLYSSKSR |
| Ga0272435_100211213 | F001253 | N/A | LFQXNHHVERREEIIYREIKEXDKKLVTFIKDVIKDVLISSTMSSSDNLFALKSLTIECVLSSNEISYSLKSLIDTKAADYSFIDELIAQNVYDHLQIESLSLIKLKSIREFNDHYAKKLITHAIYSNLTV |
| Ga0272435_10021125 | F033266 | N/A | MFSHSFTEEHSEEFQNRFSHIFDADSLKSSSAASFIHENDESFTEMIISLMFYEIXKTXSLVLDKETDQLYELEKQQKDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKN |
| Ga0272435_10021126 | F004755 | GAG | LSYIYSRLFNDTAEITQAKRERDCVNLYRIIEDFLKELAQLFNDSNKKVNFRKKYYNLIQEFKKFNEFYTQFQRLFFYLDYHEKQLIVDLKDKINSRLXFIXVDQLVQSDFLKEICFYLIHLNNDQRVIQKIKNKLKHVNNLSKTIFHKAIVVTQSVDHLKSNQLKSCDAILTSVKEADILFKSCFICHKSDHSFKKCLDRSTKINAVNKEYDCFNFDLNFNLKN |
| Ga0272435_10021127 | F028368 | N/A | LLQFRFEFQFKKLVIFSKVIKEVEVISLCKVDEILSKENYFEKSFLIDTHFISQKXSFSLCSLIDSDSVVYMIIHFNLVNKVCKKLKIQFISLTKEKLIRDYDEKIFKKTITHKILFNLIIKSHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNDVIVFLNQLNTSISIFFISLNSKHSSXSRSTSLSLITQTKTSMMLKRFISITVQKESFLIENINVTLFKTLLNHLKKNKIKVFALFMMNMNRKIAYNTQCDLNALNVSSVNETTQNLENIKAKLFLKYHEFLNIFDXV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |