NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272435_1002217

Scaffold Ga0272435_1002217


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1002217 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19107
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004755Metagenome424Y
F008115Metagenome338Y
F028368Metagenome191Y
F044227Metagenome154Y
F048017Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10022171F044227N/AMQLXLKSSNNETCTHALLELIAFAIKNTMKCXLLKLLNNHYYHEEFQSSCKNDDENETFEAI
Ga0272435_100221715F008115N/AMLXNVYXLHDLFSSIVSNRDSQFISTMXKSLCKXLRITASLFIVYHFEINDQLKRVNQDVERKLRIYCNNMQNDXIKXISMMKFNDNFNIFLITSIIFFYFNKEFHSXMSFDSNTTDYKTTHERLKARKADDIIIXMKELLSFDHQQLKKTKLIIEVQINKHRXNVTYEVDDXVXLSFRNVKTMRLCKDLKDKQLDLYQITAKVSIFYQLCLSVSMKHLHSMFSSKLLXLYSEDSLSEQHSESLRLITIKDDEHXKIDNILNFRRYXDQIQYKVKXKDLDRNNEXYYVDKEKFNNSEKVLNEFHKLYSSKSR
Ga0272435_100221716F048017N/AMFIDHQTLKIFMKNKQLSQQQVNYLNILLKFNFQIIFRSDKINTKVDALIRMSLTNVSESAQRFKDHFQTILTLNKVNVLSIKLKANLYQQVCIINQINEFCSKYKQAMNDNKLKFHITKLKNCKIIDNVLFRKDLL
Ga0272435_100221718F028368AGAAGLCKLDEILSKENYFEKLFLIDAHFISQNXSFNLRSLIDSDLVIYIIIHFNLVNKVCKKLKIQSISLTKKKLIRDYDEKIFKKTITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMXNNVIVFSNQLNTFISIFSILLNSKHSSXSXSTSFSSIIQTKISTMLKRLISIIARKESFSIQSINIASFKRRLNCSKKNKIKVFALFMININRKIAYNTQCDLNALNISLINKTTQNLKDIKAKLFLKYHKFLNVFDXVLRAYQDXTRLKL
Ga0272435_100221719F004755N/ALKELAQLFNDLNKKVNFRKEYYNLIQESKKFSEFYTQFQRLSFYLDYHEKQLIIDLKDKIHSCLXFIXVDQLVQSDSLKEIRFYLIHLNNNQXVIQEIKNKIKRVNDISKTIFHRTTIITQQSFNHSKSDYLKSCDAILTNVKEVDILVESCFICHKSDHSFKECFNXPTRTNAVNKKYDRFDFNSNFDSKN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.