NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1002547

Scaffold Ga0272435_1002547


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1002547 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17107
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F008115Metagenome338Y
F048017Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100254714F048017N/ALSQXQVNYLNILLKFNFQIIFRSGKINIKVDALIRMSLLNISESAQRLENYFQTILIFDRVNVLSVESKANLYQRVHMINQIDEFCSKYRQAMNDNKLKFHITKLKNCKIIDDVLFRKDLLXIFENIHTKLLQKVHDQSSISHLDNKXIIDLVQHFYY
Ga0272435_10025472F000597N/AMSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKLIREFDDHYAKKLITHVIYSNLTVQDHMINTASMLITXLDQH
Ga0272435_10025477F008115N/AMIXIMLXNVYRLHDLLSSIVLNRDFQFISIMXKSLCKQLRITASLFTVYHFEIDDQSKXVNQDVERELRIYCNYMQNDXIKXISMMKFSDNFNIFSITSMIFFYFNKEFHSXMSFNSDTTDYEMTCERLKARKTDDIVIXMKELLSFDHQQLKKMKLIIEVQINKHRXNVTYEVNDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKIDIFYHLHLSVSMKHLHLIFSSKLLQSYSEDFLSEQHSESLRSITIEDDEHXKIDDILNFRRYQDXIQYKVKXKDLDRNDEXYYVNKEKFNDSEKVLNEFHKLYSSKSR
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