NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1002575

Scaffold Ga0272435_1002575


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1002575 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16993
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F009377Metagenome318Y
F048685Metagenome147Y
F055317Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100257514F003820N/AMKLFNYLEYDDCTLMNDLQNKINNHLQNALSVCSENFTSLTCLRIFLQDVNNKQQVNYQLRSQLCTVIIKITVISDKCAATSLSTVMTLIINYVKFILSFISESARSSIICYTCKILNHLFKNCFQNKINTFAFHAFISCLHEIVILKNKKNEKMSSFKDSETKN
Ga0272435_100257515F000597N/AMKKMLISSMMSMSNDSFASESLTTECILSSNEISYSLKSLIDIKAAEYLFIDEVITQIVYDQLQIKFLTLIKAKSIQEFDDHYVKKLITHVIYLNLTVQDHTIDTAFMFIIQLN
Ga0272435_100257517F048685N/AMYXFDKQNIKINALTHQADVMSKDSEDECICYQXITILTSNXMKIADLKKNISKSIYKQILEINEIDENCMLLCEAIARDKTQYENIKLKNCXTQNEILCYERIKTD
Ga0272435_100257519F055317N/AMKVXKKRIYALNKETDHLVKMKQRDKSEIQQLKAQLQAFTVITVNVIITAFSIVIYFERSRYYKILDSSMFTDEKNSTXKNXSLDIQEKLAINVDIFSNELYKLSYIHSXLADDIVEVTQVRCNLNCDNLYLTVNELLEKLAQLFHDSDKKDNYCRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVIDLKNKINSRLQIFXTAQMKSLIKLSDIXNYLIRLNNEHRAVREIKNKLLKRDDSKIIISRATIAVQSSTLKSDXSKLRSAVLTSVKNADVLVEICFVCHKSDHSFRECLNRSIKVNAVDENYDHFELNTESEFESKN
Ga0272435_10025756F009377N/AMTRSSESASIARYELQNARRESLLSQNXTVSEEEDTNASLNTEEENMNTLFFDHEMIKISINTELNAXISTHEADDIVVFIKYMCQQHDIEIKTHNDMIQMLEDVNEINITLKITQTRLQKENKDKNMIIHHLKAASSRQSTLISEDXFSKSIKLLDSSLFEDSTQNVDNXLFXMQNKLKANKNHFSIKELKIAYIESRVSEAAIKHIASHMQDIFLNLFLEVEEVLSIINKMYDDLNHHHTTQQQYLRLYQNKIFFHEF
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