NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1002600

Scaffold Ga0272435_1002600


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1002600 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16813
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032884Metagenome178Y
F044227Metagenome154Y
F070710Metagenome122Y
F089603Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100260012F044227N/AMQLQLKSSDDETCTHALLELIASAIKNATRRRLLELLNNHHYHEESLSSCKNDDENEVFEAI
Ga0272435_100260016F070710N/AMIKQSLLXILQYNIRKSLKIQKSFLINKEVCDFDIVIIQKQNHNINDIQSFNSAHNFFYLVKNTSSQSRTCIYVNKCLRFNQXMIETVESDICLIRILTHNTDNKMQTLQLINIYNSCSLFSTSTKRSSIISRLSKLLKDDCKQLIMRDFNLHHSHXEKXRCFT
Ga0272435_100260017F032884N/AMTIRNERVEREECEETKKNESTMTRVEKERLYVQTINVIDQREDIKQXLXSDYM
Ga0272435_10026009F089603N/AMINSHYRKLERIIKKTKNIVMYINASQIRKKIAEIETETETTVIFTHELIRYSKATSISDKIIIMKVKLQAISDAIAICSEKALKNSEI
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