NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1002784

Scaffold Ga0272435_1002784


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1002784 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15925
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011463Metagenome290Y
F070712Metagenome122Y
F074202Metagenome119Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100278415F074202N/AMSSCLLCSDNAFNLVLFLNDDFFLKLIILKLRLHVETEFNFKEKVILCCSFFTVKDDDLDSSFNLKTATNFIKFLXFIIFYNDXSFFFNLFLSVKCDVTXSKXANSENXAFKSEIIINLAVVNLAVVNLAVVDLAVLNNVNNESSLKFENLDCKDDMKRLTLSISSFFSSDIVN
Ga0272435_10027842F011463N/AMKELLIFNHQQLKKMKQIIEVQINKHRXNVIYEVNDXVXLFFRNIKTIKSCKNLKDKQLKFYQIIVKVKIFYHLHLLISMKQLHSMFSSKLLHSCFNDLLSEQHSESSRFFTIEDDEHXKIDDILNFKCYQDXIQYKVKXTKLNXNNEXYYVNKEEFKKLKEVLVEFQKLYSDKSY
Ga0272435_10027844F070712GAGMNDIKEKKFLIKVRKQVIFAEKXDSLNLYKKIKVITLVDHSKLCDVILTSIKDINLQAEIYFICHKSNHTSRECSDQSKVNALKDDKFD
Ga0272435_10027846F096307N/AMLYIVVTQIDVSLKEDVLKHKKDVDLKNVCNTKKCVYHRNLLITCNTKRCVYLKDNRSXLEDARKEKKCXVIFELNLSQI
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