NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1003909

Scaffold Ga0272435_1003909


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1003909 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12198
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029296Metagenome188Y
F039410Metagenome163Y
F080688Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10039095F029296N/AMSELLIFDHQQLKKIKQITEAQMNKHKQDVIYEVNDQVXLVFENIKIIRSCKDLKDKQLNLYSITVKVEIFYRLQLSRSMKHIHSMFSSKYLXSSSNDSLSKQHSEFFKLMIIEENEKHXKVDNILNFRXYKERLQYKIKXIKINCNNEXYYVDKEKFNDLKKVLNEFHKLYLNKSH
Ga0272435_10039096F039410N/AMFKAFKLHXVLYVIFLLMFIMNKVKTLILFFFEXFNSILNEVMFMLQIENDFFXIIVETDHLSILEIFDXEIKVNKVDHDQLKCFELKEIEKIEMKVFNLFKKMMMLICIFSNISFLFIYDFSNMTSXXLISIINIETVNFLXLSMMRFNKILXVIVFLNIFSSYFFINFSFVSDINXIFSFLHTLLTKLICMII
Ga0272435_10039098F080688N/AMFQTLMTXAEMHXITHSDVHQSSDFEDLHEKQTVKLMINQLSEHSIEVQFSDHF
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Biomedical Sciences Research Center "Alexander Fleming"
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