NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272435_1004886

Scaffold Ga0272435_1004886


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1004886 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10274
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028367Metagenome191Y
F046102Metagenome151Y
F068292Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10048861F046102N/AMKDVLISSTMSNSNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVYNHLQIESLSLIKLKSIREFDDHYAKKLITHAIDSNLTVQDHMKRFVSMLITRLNQHQMILEKTXMNKIEIMIDMRNDHLQFSDSKIHINAN
Ga0272435_10048862F068292GAGVKQRQVDXSTSCQDTQSAEQXINQKEASTISILICCFEVEXSSTFKAHFQRESSTVSDNENDHHKFIKLLNLLIFIKTDDSIXKTXNIKITDKLNVNANHYFTEKICIVYVIFRLEDDVDQQIYAKHHIDAFSFYQLLLKLLKHLKEIYEDQNLIXKCRCKYIILKQLNKSFSSFYSEFTRIFSFLNYDDITLMNNIQNKINNHLQNVLSVCFIKFNSLDKLKIFLQDVNNKQ
Ga0272435_10048863F028367N/ALLXFXFEFXFKKLIISSKVIKKIEIISLCKLDEILLKENYFEKSFLIDVHLIFQKXSFNLHSLIDSDSVIYMIIHFNLVNKVCEKLKIQSISLTKEKLIKDYDEKIFKKTITHKILLNLIIKSHKKLTVSMLIVDINHHEVILSKLXMNKNEILLNMQKDVIVFXINXILLFQFFQFHSI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.