NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1005121

Scaffold Ga0272435_1005121


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1005121 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9837
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025887Metagenome199Y
F086376Metagenome110Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100512111F086376N/AMTRSSESASIAHYELQNARRESLLSQNQTASEEEDMNASSDTEEKNMNALLFDHEMIKISISTELNAXINIHKADDIIIFIKYICQQHDIEIKIYNDMIQMLKDINEINIMLKIIQTHLQKENRNKNMIIHHLKAASSXQSTSISEDKFLKLIKLLNSFLFKDSTQNVNN
Ga0272435_10051215F098340N/AMIKVAVYXTLVKNKKIKIFFLIISEINKVFSSVEDFAKLNEMISVMSLNELKKRLLIVYQNLLNVFDRKKTTQLSLHQSYDHKIELEDES
Ga0272435_10051219F025887N/AMFDDSFDFKSFIVDVILSSLKKIFRSFTLINTKVINITFIDESLMLKLCEHFDIQSILLSKSKLIQLYDKISDQKSITYALYTLIMI
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