NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1005539

Scaffold Ga0272435_1005539


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1005539 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9212
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033265Metagenome177Y
F036504Metagenome169Y
F049323Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10055392F033265N/AMTSQLKKQSELCYETSINCMIYSVLLFXIETLNSYSLCERVFVNDYKLSLVYSLLIISRLMIKQSKSIKTLNANSESTVITCRMIELNEYLXLSSVTMSIHSRSSQXFFSTSIKNFTLKXVSIQIQLIMKSLMNKLKLEKQMILSFEXKKLLNFDCQ
Ga0272435_10055394F049323N/AMMKEMNEESAEQQEEVLRMTXRIQQRCAKFKLNISSXLALIKLIRIRSEFXLIQTCL
Ga0272435_10055396F036504N/AMSRQDTQSAEQRVNQKVEXSLTFKAHFQXESSTLSDNENNHHKFIKLLNSLIFIEINDSIXKTXNIKITDKLDVNVNHYSTEKICIVYVIFRLEDNANQQIYAKHHVDAFSLYQSLLELLKHLKEIYEDQNLIXKCRCKYVALKQLNKLFSFFYSEFTKIFSFLNYNDITLMNNIQNKINNCLQNVLSVCLIKFSLLDKLKIFLQDVNNKQQVNYQLRDEQXTVKLIAALKKRFVSSLTSASASTINYVQLITFFTLESEXSRMSIICFNCKVLSHLSKNCSQLKTSTSTSCALISCLNEIIMLKEEKKLFTEKSKNETKN
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