NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272435_1005607

Scaffold Ga0272435_1005607


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1005607 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9138
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028368Metagenome191Y
F033265Metagenome177Y
F033266Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10056072F033266N/ALFTEEHSEKFQTRFSQIFDADSSKSRTKSSSAASFIHEDDKSFAEMIILFVFYEIXKTRSLALDKEIDQLYKLNKQQEDEIKELKTRL
Ga0272435_10056073F028368N/ALKENYFEKSFLIDTHFIFQKXSFSLHLLIDNDSVIYMIINFNLVNKVCKKLKIQSISLTKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLIISMLITDIDHHEVILNKLXMNKNEILLNMQNNIIVFLNQLNTFISIFSISLNSKHSSXSRSTLFFSITQTKIFMMFKRLISITAQKESFLIQSINVTLFKILLNHSKKNKIKVFALFMMNINRKIAYNTQCNLNALNVSSINEMIQNLENIKAKLLLKYHKFLNVFDRVQLNKLLFHHFYDHKIELTSDSTFSCYQAYXMSSVKLLKVKKYLNENLSKKFITFN
Ga0272435_10056076F033265N/AMSIDCMIYSVLLFXTKTFNSYQLCKKVFASDXESQLVYSQFIILKLMINXNKSIKMLNVNLEFTAITCRTTESNEYLXXNLATISISSXSLQXFSSTLIKNFILEXVSIQIXLTMKQLVNDLKLKKQMILSFKXKSYXALIINNXKRXSXSSKFTSINIDEMSHMK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.