NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1007566

Scaffold Ga0272435_1007566


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1007566 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7174
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028667Metagenome190Y
F033265Metagenome177Y
F037508Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10075661F037508N/AMIFRLEDNADQQIYAKHHVDASSFYQLLSELLKHLKEIYEDQNLIQKCRCKYITLKQLNKFFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNHLQNVLSVCLIKFSSLNKLKIFLQDVNNKQXVNYQLYDEQ
Ga0272435_10075663F033265N/AMTSQLKKXFESCYETFIDCMIYSVLLFQTKTFNSYQLCEKVFASDXESQLVYSQSIILKSMINQNESIKMLNANLESTAITCRTTESNEYLXXNSATISISSRSLQXFSSTSIKNFTLEXVSIQIXLITKQLMNNLKLKKQMILSFKXKSYXTLIINNXKKRSXLSKFKSININKTSHMK
Ga0272435_10075665F028667N/AMTRDFESVESRTACLLRSTASRRVFIISFDVSARSQNVAISXDINTSQQLRQXTIDQSDEIIKMLIELKDQRNMTLKLNEQXIDVQVDHIKRLDELEINQMTINTQEETIIDLREKVLSLKKRQRSANQSQSRQSTESRVSTKSLPCQFIENHTRRKLFILFDNDHHKSFKFLNSSVFIDEDESTXDSXRIKMNDKLQTNVNHFDNENICIVYVIFRLEDDAAEHIFAXHHHDALHSYILIYELFEHLKEIYDELNRNRKCRCKYNALRQAEKSFNVFYFDFMKLFSYLEYDDHTLMNNLQNKINNRLQNALSICSENFTSLIRLQIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKCAATSLSMTTSIINYVKSILSSISESARSSIICYTCKISSHLFKNCFQNKINTSASCAFTLCLHEIIILKNKKNEKMSSFEDSEAKN
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