NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1007954

Scaffold Ga0272435_1007954


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1007954 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6922
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058565Metagenome134Y
F070710Metagenome122Y
F075493Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10079541F058565AGAAGMNHMNCSSADSKMIVSDVNSLQENRDARLKHLRNDEENVANIIDLLIKISTLEKEKSKDYSXKKIALKLIQCL
Ga0272435_10079543F070710AGCAGMFNQKVRKIIDDQKHTKSLLIAESTTVMNNFMTEQSFLQILQYNIRKSLKIQESFLINKEVREFDIVAIQKQDHNNNDLQSFSSAHNFFYLVKNSSTQSRTCIYINKHLRLNQXIVETVESDICLIRILTCNTDDETQILRILNVYNSCSLFTKFTEKSLIISCLNKLLKNDCKQLIIKDFNLHHSHXEKQRCFTHHMMTNTLLNIITNAKLELLLKSDTITHEVHN
Ga0272435_10079546F075493N/AMQSVQAMHEYMLRYLMTSFTVASQAIHVXNISKVQISIQIYAFSFDVHCKSAFCFLKIITHLYHLIAQMXSLCXDYIDVCNAFSVLFSSLISLILVILLYCNAIVCXSYYEEEKSASSASXLYLRIFLNEDIQKYYFLDDK
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