NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1010134

Scaffold Ga0272435_1010134


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1010134 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5747
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011463Metagenome290Y
F055317Metagenome138Y
F059496Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10101341F059496N/AIFKDSYNXILRIQKKIDTKASIYVMFRDCARLERNVFVTXKEDDVNE
Ga0272435_10101342F011463N/AMKELLSFDHQQLKKTKLIIEVQINKHKXNVTYEVNDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKVSTFYHLCLSISMKHLHSMFSSKLLQLYSKDSLSEQHSESFRSITIKDDEHXEINDILNFRRY
Ga0272435_10101345F055317N/AMKQRDKSEIQQLKAKLQAFTAITVNVIITAFSIVIYFEXSRYHKILDSSMFIDEKNSTXKNXSLDIREKLAMNIDIFSNELYKLSYIYFQLADDIVEVTQVRRDLNCDNFYLTVNELLKKLAQSFHDSDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVIDLKNKINSRLXIFXTTQMKSLIKLSDIQNYLIRLNNEHKAVQEIKNKLLKHNDSKIIISKAIIAVQSSTLKSDXSKLRSAVLTSVKNADVLVETCFVYHKLDHSFRECLNQSIKVNAVDENYDRFELNIESEFKSKN
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