NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1013731

Scaffold Ga0272435_1013731


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1013731 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4555
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F057012Metagenome136Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10137313F009377N/AMTRSTELESELVSTTRYETQDAERESLLSQNRTASEEKDTNASSNIKEENTNVLLFDHEMIKISISTKLNAXISAHEADDLVVFIKYICQQHDIEIKTHNDMIQMLNDVNKINVELKAINIKLKATQTTLNAVRTHLQKEMKKKNVIIHHLEVTSSRLSTSISKDRFSKSIKLSDSSLFEDSRQNVNNXLSRMRNKLKMNKNHFSIEEMKIAYVKSRVSETTIKHIALRMRDTITNSFLEAEEILSIINKMYDDLNRRHTTQRQFLKLYQNKIFFHEFXMKFQRLSVKLEYNNKTLLDDL
Ga0272435_10137314F104136N/AMIFNIRLAQIFSESXSMNELXIXTNSLTSACKSTFDXXNXMLDQPSRHQRLKSLILSLASXRRSLLRSQLQSLHERNSEYRTLILLERSCLKKNSASNARSQNIEHMTVLSQLRCTKSQRIRKTTCSRQSSDXERYTRILLHQHAXXLIXFQVVHCXRHLE
Ga0272435_10137315F057012N/AMKVTDMTFIDESLMSELCKRFDIQSISLSKSKSIXSYDEISDQKSITHVLYTSIMIQEHKNEIMSLLITRLDQHKIIIENLXLKRNQMLIDSANDRLISLLKIRTSKSVVLKASSQSAFHRSESNEICERKRKNLNLIVTSTIILKRLMNQKSVNRFIESALIAKQSTQVDLDQLCSFQSTKAKKLVNIVMIKVAVYXTLVKNKKIKIFFLIISEINKALSSV
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