NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1041819

Scaffold Ga0272435_1041819


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1041819 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1904
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003820Metagenome466Y
F017767Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10418191F017767N/AMKEMLISSTTSMSDNSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIA
Ga0272435_10418192F003820N/AMKLFSYLDYNDCTLMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVMIVSDKCAATSLSVTTLIIDYVKSIFSSISELARSSIICYTCKISSHLFKNCSQNKINTSASCVFTSRLHEIIILKNKENEKMCFENSETKN
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