NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1050357

Scaffold Ga0272435_1050357


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1050357 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1622
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017767Metagenome238Y
F028667Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_10503571F028667N/AFIKTHLQIYSNLLKFIKSITQLYHNQIYLSIFLTMTRDFESVESRTAHLLRSIASRXVSLISFDASVNVKNVDISXNIKTEEQLRQXAHDQSNEIIKMLNELRSQRDTTLKLNEQXIVVQVKHDKRLNQLEIKQMIIDTLEEANKRYREKMLNLKNKLKEVLHSANQSRPRQSTEPRVSTKSLPRQSIENHTRRESFTLFNNDHHKSFKFLNSSVFIDEDESTXNSXRIKMNDKLQANVDHFVDETICIAYVISRLEGDAAEHIFAXRRHDASHSYILIYELFEHLKEIYNELNRNRKCCREYNALRQADKSFNVFYFDFMKLFSYLDYDNCTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQNVDNKQRVNYQLRSERRTIIVKVTIVSDKRAATSLSAVTTSIIEYVKPTIFSTSESVRSSIVCYICKISSHLFKNCSQNKINTSASQAFTLRLHEIVISKNKENEKMFFSSENSEAKN
Ga0272435_10503572F017767AGGMKDVLISSTTSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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