NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000158

Scaffold Ga0272438_1000158


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000158 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)99080
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (17.02%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F002432Metagenome559Y
F008735Metagenome328Y
F021026Metagenome220Y
F021216Metagenome219Y
F023763Metagenome208Y
F037509Metagenome167Y
F038484Metagenome165Y
F048018Metagenome148Y
F061399Metagenome131Y
F083460Metagenome112Y
F086376Metagenome110Y
F091080Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10001581F083460GAGMQLQMKSSDSQAYSDALLELNTSLIKYAARHQLHELLNHHFNHEESQDNSENDDENEAAEAV
Ga0272438_100015811F021026N/AMIVFCILHQAQSRVFTLALIDSEVFAYVFMNKFFTQQHHLFLHQLIHSRRLQEFDDQVALINDITYVVEITMILNEHIERLFFYVIELNQYFIIISLSXLHHHIIDVNFEHNILILSFFFCLNHCCSFLVKIYDLNQQEENFSFKVNKVTFSQSRFQFAHKK
Ga0272438_100015812F008735N/AMREIMIIIHVHTLYQTLLSCIQSIFVLLILKYVKKLLKFRSDDDSDRICKRVNDKKRLIVQNLCNDLSYHCKKLRNQFYINXRTKNDEXEXDDNIMLLNLILKLTHCMKNLNXIFNHTLSELFDSMLIIDQEIVKXLHLSERVTRXDFNV
Ga0272438_100015819F091080N/AMIILCXSKQVINKNIISFLYFCIMIDVYKVYLIDFQSEVSSYDXIDFDFNSNIDXISKCSHSSDIKDSLMKVMLMTSVFIRARNLNIFSRLFKMTSTVNNLKLNQSSNMLMKQNINILLSIITLMKTDHFSNLQ
Ga0272438_100015837F086376N/AMTRSTESESVSITHYDFQNVKRESLLSQNQAASEEKKGMNAMSNTEEENINVLLFVYKMIKISINKELNAXITINKTDDIIIFIKYMLHQHNIEIKIHNNMIQMLKNINEINITLKIMQTCLQKKNRDKNVIIHYLKAASSXQSTSISED
Ga0272438_100015838F038484N/AMRLILMCIARMLSAFXRLSRIFIILLLRCNLCAEIALTSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKKMCRLRLDCIFASSRMKTFRSTIFLMTSEREMTRLTLVKRARISLHACLISCVRSLTRLCSVIWFCSMFRXTCSELMYVSVSRVSMFTLLNASATXRRAXFXSVSSLRSLFDSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIASHVKTSRRLSVSILVTXFVSICRRCASHRSFVFSCISKTRTSDFNLITELSICMLVVMSNFFDFLVKCVSSYFSDANVASXMRAHFAQTLCALLSVLQISSVNLS
Ga0272438_100015852F037509N/AMILISIFIQIHSTDNEMNIKKFVYLIINDIERQNNIKRSIESTKTYDYVIAREFTAQSVASVQID
Ga0272438_100015856F002432GGAMQNDXAKXLSIIEFSENFNIFLIISMILFYFNKKFHSQMSFNSDTTDYEIICERLEVRKADDIIIRMKELLIFDHQKLKKTKQIIETQINKHKXDVIYEVNNXVXLFSRNMKTTRSCKDLKDKQLKLYQIIANVEIFYHLHLSESLKRLHSMFSSKLLRLYFNDSLLEQHSESFKSLTIKNDEHXKINDILNFRCYXDRIQYKIKXTELNQDDEXYYVDKEKFKDFEKILIEFHKLYLNKSR
Ga0272438_100015863F091080N/AMIILCCFKXVINKNIILFLCSCIIINVYRAYVIDFQSEISSYNQINFDFNNDIDXILKYSHSFNIRNSSINVISMTSVSIRVRNLNIFSRLLKMMLTVNNLKLNVSSDMLMKQNISILLSITTLMKTDRFLNLQXFHALELF
Ga0272438_100015869F048018N/AVSXMIQRYSLFELSMYFLSXRYRXFSCSLHLIKEILLXCHASLQSASIIXTVNLSLILTCFHNVXMRMSAESSSRFRMSXFSXDLIFLMLNSSISKFMKVKICESVKITENRCNXTESRMMICDXSFMTLMLKMLKMRFLIISEFKTXVFRIVXCXYXYXELNVFFSLRRSFEXRVKAFNLSSILLKX
Ga0272438_100015878F021216N/AMKSRMKSNAMKKEHHELEKVLERNNDDHSNDTFNEHTESISSCDIIKESNERERK
Ga0272438_10001588F061399N/AMNYVNSLSLNIFINITYKYVLVFINHFIKIRHLVLITFMKVEEVINCFYAHVXKHHDLLEFFVSDQDTQFIFNVXKHMCKMLKINAKLSMMYHFKIDDQIKRINAVMKHYLQIFVNYMQNDXVKXLSEVEFIINNASSLITLASLFLINLSQNSCLDFKSSESLLENLTFQAXNKLINVEEFIKKMKKLTEHLRDEMLIAQIIYEFNVNFFHCSCSKYFIEDEVXLNVHNFSIAHLTIKLNDHNVDLFKIKCVFKNNSLIIKLNLSVFMKIHSIFYVILLNHITSDFLLSQHQKSQELVIIKNDERFXYVNSILNFKRDKCYNSSLLKYYIN
Ga0272438_100015885F000597N/AMKDVLISSMMSMLNDFFASKSLTIKYILSSNKINYSLKSLIDTEAANYSFIDEVIVQIVYDQLQIKFLTLIKAKSIQEFNDYYAKKLITHIIYLNLMILEKTXMNKTDLVINM
Ga0272438_10001589F023763GAGMSFQNCLMLILISRIECILLFKKIFXATCQSIQLIINLVEIISDAIVEFRQKLTSTSLMMTQLLNXHEILKIFMIHDHLNRINKVFKLXSSFLESANNDHEFFIVDLVVTLNXVMLLXKVSDXMKNLILIILRKNVFEHIVXSIDFYHNFVIXIIMMKNNLESEDFFKSVECNLTFLKSDKEYIFSDEMSERDSYSTIVIDESFIKVREI
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