Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1000185 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1000185 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	91761
Total Scaffold Genes	106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (25.47%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

91761

Total Scaffold Genes

106 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (25.47%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F021452	Metagenome	218	Y
F028368	Metagenome	191	Y
F028667	Metagenome	190	Y
F080690	Metagenome	114	Y
F086376	Metagenome	110	Y
F086377	Metagenome	110	Y
F087978	Metagenome	109	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100018519	F002432	N/A	MQNDXTKXLSMIEFSENFNIFSIISMTSFYFNKSFHSRMSFDSDTTDYKTTCERLEARKADDIVIQMKELLTFDHQQLKKMKQIIEAQINKHRRDVIYEVNDXVXLFSRNIKTTKSCKNLKNKQLKLYQITVKVEIFYHLRLSISMKQLHSMFSSKLLHSYLDNLLSEQHSESFRSLTIEDDEHXEIDNILNSRCYRDRIQYKIKXMRLDRDDEXYYVDKEEFENSKEVLVEFHKLYSDKSY
Ga0272438_100018524	F028667	N/A	MTRDSESVESXTAHLLRNIANKRVSLLSFNISTEAKNVEISXNIKIEKQLRQXALNQSNKIIKMLNELRDQXDMTLKCNEHXIVLQINHIKRLDELKINQTTIDTQEETIIELREKVLSLKKKQRSTNQSRSRQSTKSRASIENHTRRKSFTLFDNNHHKFFQFLNSFIFINEDKSTXDSXRVKIDDKLQTNVDYFDNKNICIIYVISRLEDDAAEHIFVQRXHDALHSYILINELFEHLKEIYDELNKNRKCRREYNALKQTDKSFNVFYFDFMKLFSYLEYNDRILMNDLQNKINNRLQNALSVCSKNFTSLTRLRIFLQDVNSKQRVNYQLRSERHTVIVKVTVVPDKRATSLSVTTSIINYVKSTISSITESARSLIICYICKTLDHLFKNCFQLNKINTSASHAFILRLHEIVISKNKENEKMSFKNSETKN
Ga0272438_100018534	F021452	N/A	MFDDSFDFKSFTVDVILSSLEKIFRFFTLIDTEVTDMTFIDESLMSELCERFDIQSISLSKSKSIXSYDEISDRKLITQALYTSIMIQEHKNEMMSLLITCLDQHKIIIENLXLKRNQILIDSANDXLISSLKI
Ga0272438_100018536	F086376	N/A	MTRSSESVSIARYDLQNVKRELLLSQNXTASEEEDTNASLNTEKENMNALFFDHETIKISISTELNAXINTYEADDIVVFIKYICQQHDIEIKIHNDMIQMLENVNEINITLKITQTRLQKENRNKNVIIHHLETASSQQSTSISEDXSSKLIKLLDSFLFKDSTQNVDS
Ga0272438_100018553	F028368	N/A	LCKLDEILSKENYFAKSFLINAHLISQNXSFSLCSLIDSDFVIYMIIHSNLINKVCKKLRIQSIFLTKEKLIRDYDKKIFKKIIIHKILLNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNNIIVFSNQLNTSISIFSILLNSKHSSXSRSSLFSSIIQTKIFMMLKQLVRKESFLIXSINAASFKTLLNHSKKDKIKVFALFMININREIMYNTQCNLNALDVSSINEPTQNLKDIKAKLSLKYHKFLDVFDRAQLNKLLSHRFYDHKIELISDSTFSHCRVYQMFSVKLLKVKKYLNENLSKKFITSSQTLYFFFVLFALKANEDFRFCVNY
Ga0272438_100018561	F086377	N/A	MIQRFXDQKQRISILDCDSVQISIVHAEAKFFFEFLNEENRDDHLKVTDSNEIFAQILIQITTKF
Ga0272438_100018567	F080690	N/A	MKLSHNFLINDEHAVKQFTQSMIKNSVEIFRVMRELQNQVQQHDVITSFLFIIFNSSVYIELNSQSLTMIAQIVAQILNNQSSFIIHLSANSVAVIIASRFKKLLDIFECERNKDXLNAXKQSLIQRMNVNDDHYLSHQVKIVYVKSXFIIDKKTYNLMSQYRVNNLCIIFIFADXQHKLHHCYDNSFKTEDAHLYFREILKQDMSNFVDYYNLFYSKKECFLMKDFSLIDCLKRNVNYFTQVIVFFXXNFNET
Ga0272438_100018568	F087978	N/A	MFSSKLLQSYSENLLSEQHSESFRLIIIKDDEYXEINDILNFRRYXDQIQYKVKXTNLDKDDEXYYVDKEKFNNSEKVLNEFHKLYSNKSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1000185

Overview

Ecosystem & Geography

Associated Families

Sequences