Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1000189 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1000189 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	90859
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (6.67%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

90859

Total Scaffold Genes

90 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (6.67%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F021026	Metagenome	220	Y
F035571	Metagenome	171	Y
F038009	Metagenome	166	Y
F038484	Metagenome	165	Y
F041516	Metagenome	159	Y
F044227	Metagenome	154	Y
F050043	Metagenome	145	Y
F064254	Metagenome	128	Y
F070710	Metagenome	122	Y
F104134	Metagenome	100	Y
F104135	Metagenome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100018926	F064254	N/A	MXKLYELVSFLLSLSFIXLFDDVTVXNXCSMLVESIIXMIAVITLMISRSFLNFVMFFLHCIVFHSIFHLEHVNRMCLINIXSLSHLHVIIVTLSTRLSCRNXLKSIFLMRSCVSNALXDFTXSLCKRRCXXVISDIRYXKXIALNLFLQTTLHVYLISYIIISVR
Ga0272438_100018931	F050043	N/A	MKRRXRLKETKRTINKATIIIHSCLCFIISTTQFNXKTSNVYASFTRDXCCCLHQLHITYTIYNVIYTHYNQRXIIIQSKVSLFLVFSQRFKDFYRELLERINECASSFIRINKDINYXDQEXTHLEEKTIVMMNXLIEIRSEAKVKDXVEDQIXVSSETLXLCQDII
Ga0272438_10001894	F038484	N/A	MHFLYFSHHCSHXSLXYNAIAMLSLIEVVIERLNHLHLDCIFASSXIDVFRSTTFLMTEKRKMKXLIFVSXARMSLHAHLFSYVLLSTQLRNVTLFCSMFRXTCSELVYMLISSVSMLTLLNAFATXCRVXFCKVSSLHFLSDSSFFLLHXCQIDALNVISDLITAEYTCLAFVKIASHVKTSRRLSASILVTXLAFICXRCALHCSFVFSCIFRTHTSDFNLITELSICMLVIMLNFLDFLVKCVNLYFSDANVVSXVQTHFAQTSCVFFSSLSACSLWLWHCLGAVCMRSYM
Ga0272438_100018949	F104135	N/A	MIQTFAAHLSTLKHQLSLYSDEHKRAHLFIKLRSELHVIITNVQSISITXDVLINLVARLKTNLRKEHVLSLKXSQDEDLHDXDKINKKTHSKXKKSHRLIRLNSSSKTSLHTSSRYNKNLFNITCYTCNQKNHYFIDCKDEKIKNRLKEFDVNRVFIDSMSHMSHFKILKKDKLLMNTSNHXEKNKKFSS
Ga0272438_100018955	F041516	N/A	MIQKVINIHEAYNSSLRNHKIIHEKENLSNIEKMLHMLKESILVEDFNLHHFTXRESFYS
Ga0272438_100018967	F104134	N/A	MFIVVRTSCVSIVKIXRATRVELAISFTHIXVFFRFAXASELTAXREISSLLSLQSDMIRFLXSVNMFAIFCRICSINFFCISFISLLFIILIMTSHFLRSDDESFLRCYFLVVISSLVTFAHDMIFVKRRMLLCVCNCLLSSXTDVFSFCTFFAMNAFXFVXCFSSESSXKRXISFNAISFHEXSLFFSFSNIDIFISKSIMLVMFSSSLREHFNSASVFSCDESTSLAIIFESALLQFVQFIIIQSSSRFTLSCL
Ga0272438_100018969	F070710	N/A	MTKQSFLRILQYNIRKSLRIQESFLINREVHEFDIVIIQKQDRNNNDSQSFNSAHNFFHLVKNSSFQSRTYIYVNKCLRFNQXIVETAESDICLIRILTCNADDKMQTLRLLNVYNSCSLFTTFTERSLIISRLNELLKNDCKELIVEDFNLHHSHXKKRRCFTRHTMTDTLLNIITNARLKLLLKLLLKSDIITREAHN
Ga0272438_100018972	F035571	N/A	MYVFVFKVSMLTLLNASATXCRVXFXSVSSLCSLLNSSSFLSHXYQTDASNAISDLTTAEYTCLAFVKIASHVKTSRQLSVSILMTXFIFICXRCMFHCSFMFSCIFRTRTSDFDLITEFSIYMLVIMLNLFDFLVKCVSLYFSDANVASXVQAHFAQTLCALLSVLQISSVNLL
Ga0272438_100018974	F044227	N/A	MXLQIKSSDDEAYIHALLELIAFAIKNVTRCXLLELLNNCCHHEESQSSSENDDENEAFEAI
Ga0272438_100018987	F021026	N/A	MIVFCILRQAQFRVLVLALIDSEVFAYVFMNKFFAQQHHLFLHQLTHSRKLREFDDQVALIDDITHVVEITMILDEHIERLFFYVTELSQYLIVMSLSXLHRHVIDVNFEHNILILSFFFCLNHCCSSLVKIYDLNQQEENFSFEVNKVAFSQSRSQFAHKKQLSSRIAHKKQFSLQIAHKKQFIFQFARKKQLSFSFARKKQLSSQFARKKQFSFQFARKK
Ga0272438_100018988	F038009	GAG	MIKTSSSQLDYVKLYRRSIELICSKDNRSSREERISTLDFXXVFFLNDLKNTTRDFLFQTRDKTERDLFLVNELSISXLLVSERRVILLLVSRRETELLLASELKTELLLASELRTELLLSSEXETELLLASELKNELLLVSDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1000189

Overview

Ecosystem & Geography

Associated Families

Sequences