NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272438_1000249

Scaffold Ga0272438_1000249


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000249 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82705
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (17.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003820Metagenome466Y
F009580Metagenome315Y
F070712Metagenome122Y
F089603Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100024920F009580N/AMICIQISERDLAQKLNFFQIQXDFFIYADDVVIVDIYDMQSEELLIXAFFSDFAQMLQFAVVTQLSLVADFLDFRNN
Ga0272438_100024926F070712GAGMSDIKKKKFLNKIQKQVMFAEKXDSLNLYKKIKVTILVDHSKLCDVSLINIKDIDLQAEICFICYKSDHTFKKCFDXTSRVNALENDEFDXFTLNSESDSDLKN
Ga0272438_100024940F089603N/AVRCDCFLKIAEVETETETAVIFMHKLIRFSKATSVSDKIITTKAKLQAISDAIAICSEKALKNSEI
Ga0272438_10002498F003820N/AMKLFSYLDYDDCTLMNNLQSKINNHLQNTLSVCSKNFTSLTRLRIFLQSVNNKQQVNYQLCNKRYTIIIKVTVISDKCAATSLSMMTLIIDYVKFIISSISKSARSSIICYTYKTSSHLSKNCSQNKINTSASQVFIFHLHEIIISKNKKNEKMSSFEDSKTKN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.