NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000323

Scaffold Ga0272438_1000323


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000323 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73125
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (11.90%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008115Metagenome338Y
F070710Metagenome122Y
F080688Metagenome114Y
F100079Metagenome102Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100032316F070710N/AMTKQSFLRILQYNIRKLLRIQESFLINREVREFNIVAIQKQDRNNNDLQSFSAAHNFFHLVKNSSSQSRTCIYINKCLRLDQXIVETAESDICSIRILTRNTDNETQTLRLLNVYNSCSLSTTFTERSSIISRLNKLLKNDCK
Ga0272438_100032326F100079N/AMFRHRHFIHEXYIDEKTLLKEERYKRINKEXSNYAVXLKV
Ga0272438_100032331F102179N/AMSVHNVNENMSTYSAMHVRSMLLKIMTLAVQEMHLDEVYFLRSRISQFKLITSRSTNVETLIHKDHNVTEKQLNSVAETVDCKQLILHAIVKVLTIHEMIXNFSNKFIVKLIKILQQEDEFAVKLKADEMMSI
Ga0272438_100032357F080688N/AMTXAEMHXTIHSNVHXSSDFKDLHEKQTVELITSQLSEHSIEVQLSDHL
Ga0272438_100032358F008115N/ALNRDFQFISTIXKSLCKXLRITASLFTVYHSEINDQLKXVNQDVKRELRIYCNYMQNDXISVIKFSDNFKIFSITSMILFYFNKEFHSXMSFDSNMIDYETTCERLEARKANDIIIQMKKLLNFDHQQLKKTKLIIEVQINKHRRNVIYKVNDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKVSIFYHLHLSVSIKHLHSMFSSKLLXSYSEDLLSEQHSESLRSITIKDDKHXKINDILNFRCYQDXIQYKVK
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