 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1000334 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 72013 |
| Total Scaffold Genes | 87 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (19.54%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F020121 | Metagenome | 225 | Y |
| F042102 | Metagenome | 158 | Y |
| F087979 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100033420 | F087979 | N/A | VKEKNESSTSIYMNXAESRLDSSFIDLRLQKFVHMIEMIETELLRLN |
| Ga0272438_100033421 | F008735 | N/A | VSLLIYDESXLNIDDLDSMKEITIIVYIHALYQNLLSCIQLIFVSFILRYVKKLLESRSNEDSDRVCKKMNDKRKLIIQDLCDDLSYHCKRLRIQLYINXRTENDEQEXDDNIMLLNLILKLLHYAKNLNXIFNHTLSELFNSTLIVDXKIVRXLHLSERITRXDFNVXKRCRKCRSFIMSKTELD |
| Ga0272438_100033422 | F001951 | N/A | MTMTKFKFINSSRNKREKDQNTVETTVTKMMIFEFKKLLINAKMLLTLMNEMIMKMK |
| Ga0272438_100033426 | F020121 | N/A | LINSSQNSHLDFEFSESLFKNLTFQAXNKLINVKEFIKKMKKLTEHLCDEMLIAQIIYKFNVNLFHHSCFKYFIEDEVXLNACNLSITRLAVKLNDHNVDFFKIKRVFKNNSLIIELNLLTFMKIYLIFHVTLLNHIASEFLSSQRQKSXELIIIKNDERFXYVNSILNFKRDKCYNSSLLKYYIDXEDHFSTXKSFHLLNNCEQALNKYHLVNFVIEESHVLSCVMSQCQCQEL |
| Ga0272438_10003344 | F020121 | N/A | LINSSQNLCLNFKFSEFLLKNFMFQAQNKLINVKKLIKKMKKLTEHLHDEMLITQIIYEFNVNLFHHSCFKYFIKDEVXLNACNFNITHFAIKLNNHNIDFFKIKHVFKNNSLIIELNLSTFMKIHLIFHVILLNHIVSDFLSSQCQKLQELIIIKNDERFXYINSILNFKHDKCYNSSLLKYYIDXEDYFFTXKSFHLLNNCEQALDEYHLINSVIEELHVLSCVIFQCQCQEL |
| Ga0272438_100033449 | F042102 | AGAAG | MNALFFDHEMIKISINTELNAXISTHEVDDIVVFIKYICQQHDIKIEIHNDMIQMLEDVNEINITLKITQTRLQKENRNKNVIIHHLKAASSRQSTLISEDRFSKSIKLSNSFLFEDSTQNVDNXLSXMQNKLKANKNHFSIEELKIAYIKSXVSEAAIKHIASCMQDIFLNSFLEVEEVLSIINKMYDDFNHHHMTQRQYLKLYQNKIFFHEFXMKFQRFSAKLEYNNKILLNDLQHKISSDLQQVTLNEXITDLNEFVDICLQVNVRLTELNAQSVVKASATQAARSVSSTLTAXLTSSVSSXKKFRRLNLDSIQKELFKKELCFKCKKSKHRAYDCLKMIQVHEITTNLKNDLLSSK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |