NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000339

Scaffold Ga0272438_1000339


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000339 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71189
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (5.63%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F005901Metagenome386Y
F024448Metagenome205Y
F046102Metagenome151Y
F048685Metagenome147Y
F057011Metagenome136Y
F065269Metagenome127Y
F091080Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100033916F046102N/AMSSSNDFFASKSLTTECVLFSNEISYLLKSLIDIEAADYSFLDELIAQNVFDHLQIESLSLIKLKSIREFNDHYAKKLITHAIYLNLTVQDHMKRFIFMLITRLDQHQMILEKTXMNKIKMTIDIKDDYLQFSSFEAHIKVSIKAHSTVLSSKKIAIEQKSLIFT
Ga0272438_100033936F065269N/AMTRSSESASIAHYELQNVRRDSLLSQNQTASEEKDTNVSLNTEEENMNMLLFNYEMIKISISTELNA
Ga0272438_100033937F091080AGAAGMIILCCSRXVINKNIISFLCSCIMINVYRVCVIDFXSEVSSYNXINFDFDSDIDXISKCSHSSDIKDSLIKVMSLTSVFIRRKNLNIFSRLLKMTSIVNDLKSNESSNMLMKKNMSILLSVTTLTRADRFLNSQQSYALESF
Ga0272438_100033947F048685N/AMYQSDKQNIKINALTHQADVVLKDSKNECIHYQQITILTLNXIKIADLKKNISESIYKQILETNKIDENYMLLREAIARDET
Ga0272438_100033949F005901N/AVISRLEDNAAEHIFAQHQHDALHSYILINELFEHLKEIYDELNKNXKCRHEYNALRQADKSFNVFYFDFIKLFSYLKYNDCTLMNDLQNKINNRLQNTLSVCSKNFTSLTRLRIFLQDVNSKQQVNYQLCSERCTVIIKVTVVPDKCATSLSITTLIINYVKLTISFISESARSSIICYICKTFDHLFKNCSQLNKIDTSASHAFISRLHEIIISKNKENEKMSFKNNEAKN
Ga0272438_100033950F024448N/AMSMSDDSFASESLTTECILSSNEISYSLKLLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIREFDDHYAKKLITHVIYLNLMIQNHTVNIASMLITQLEQHQMILEKTXMNKINLVIDMQINSLEFSNCNSRSTVFFLSERTTLKQKSLTFAYILKRLITSVISQSSQKSFSFNQFNEKSVK
Ga0272438_100033958F000597N/AMKDVLISSTISMSDDSFASESLTTKYILSSNEISYSLKSLIDIEATDYSFIDKVITQIVCNQLQIESLTLIKAKSIXEFNNHYAKKLIIYVIYLNLTVQDHTIDITFMLIT
Ga0272438_100033959F003820N/AMKLFSYFKYNNCTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCIIIVKVTVVPDKCATSLSITTLIINYVKLTISFISESARSSIICYICKTFDHLFKNCSQLNKIDTSASHAFISRLHEIIISKNKENEKMSFKNNEAKN
Ga0272438_100033970F046102N/ALCIHFLSQXDHHVKRREEIIYREIKEXGKKLVTFIKDVMKDVLISSTMSSSNDLFASKSLTIKYVLSSNEISYLLKSLIDIEAADYLFIDELTAQNVCDHLQIESLSLIKFKSIRKFDDHYAKKLITHSIYLNLTVQDYMKRFNFMLITQLDQHQMILEKTXMNKIKMIINMKNDHH
Ga0272438_10003399F057011N/AMLXLNFKNQCIRRXXIXSIYIKLXVRFXFKKLVIFFKIIEEVEIISLCSQIKVLLKENHFKKLFLINASFISQSNSFSLRSLIDSDFIIYMLIHDKLVNKICQKLEIQFILLAKKKLIQNYDEKLARKTITHKILLNLTIKSNKKLTMSMLIADIEHHEAILSKFXMNKNEILLNMRHDTIIFSDQLNISISIFLISSNTKHSSXLRSTLISSAAHSKIFKVLKHSVLII
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