Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1000351 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1000351 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	69902
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (19.44%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

69902

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (19.44%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F008169	Metagenome	337	Y
F028367	Metagenome	191	Y
F028978	Metagenome	189	Y
F036035	Metagenome	170	Y
F041516	Metagenome	159	Y
F048017	Metagenome	148	Y
F066295	Metagenome	126	Y
F068292	Metagenome	124	Y
F080688	Metagenome	114	Y
F096306	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100035111	F066295	N/A	MILDRETDQLNKLSNQQDNKIKELKTRLQTKEITSSDFIYFERSRSQKISDSFXFTDEKNSTXKNXYDKIQNKLEINVDLFSNEXIKLSYIHFRLFNDAADVTQSRCKHDCVNLYKIINDLLKKLAELFNDSDKKVNFRRKYHNLIQESKKFSEFYTQFQRLSFYLKYHEK
Ga0272438_100035119	F028978	N/A	LNQIKIADLKEKENDESIYQLILKANKINENCILLHEVVLKDEAQYKDIKLRNYQVQNEILYXDDLL
Ga0272438_100035121	F008169	AGAAG	LKIKLQAKENTSSDFIYSERSRSQKISDSSLFTDEKNSTXKNXYEKIQNKLEINIDLFSNEXVKLNYIHSRLFDDTAEITQTRCKRDCVNLYRIVDDLLKELAELFNDSNKKVNFRRKYYNLIQESKKFSKFYTQFQRLSFYLKYHEKQLIVDLKDKINSHLRFIXINQLVQSDSFKEIRFYLIHLNNDQRVIREIKNKVNLIKCINDLLKIIFHKTVITQSVNHSKSDHLKSYDAILTNVKEADILVESCFICHKSDHSFREYLDXSTKINAVNNEYDRFNFDSNFDSKN
Ga0272438_100035122	F028367	N/A	LKENYFEKSFLIDAHLISQNQSFSLRSLIDSDSVIYMIIHSNLVNKVCEKLKIQSISLTKEKLIRDYDEKIFKKIIIHKILLNLIIESHKKLTVSMLIVDINHHEVILSKLXMNKNEILLNMQNNVIVFLNQLNTSISIFXILLNSKHSS
Ga0272438_100035125	F080688	N/A	MIXAEVHXTTHSDVHQSSDFEDLYEKQIVESMTSQLSEHSIEVQLSDHL
Ga0272438_10003513	F041516	N/A	MLKTLINNAQITQRVIHIHEAYNSSLRDHKIIHEKENLSNIEKTLYMLKENILVEDFNLHHFTXEESFYSK
Ga0272438_100035135	F068292	N/A	MSRQDTQSTQQRVNQKVERSLTFKAHSQRESSTLSDNENENDHHKFIKLSNSFIFIETNDFIXETXNIKIADKLDVNANHYFTEKIHIVYVIFRLEDDADQQIYAKHHVDAFLFYQSLSELLKHLKEIYEDQNLIXKCCCKYIALKQLNKFFSSFYSKFTRIFSFLNYDDVTLMNNIQNKINNHLQNVLSVYLIKFSSLDKLKIFLQDVNNKQXVNYQLHDE
Ga0272438_10003517	F008115	N/A	MNFITELSLSEDYNIICTIICHLIKEHHYVLCHXENNDISVEETIXIMLXNVYQLHDLLSSIVLNRNSQFILTMXKSLCKRLRITTNLFTVYHSKIDDQMKQVNQDVECKLRIYCNYMQNDXVKCISMMKFSDNFNIFSIISMTSFYFNKDFHSXISFDSDTTDYEITHKXLKVRKADDIIIQMKKLLSFDHQQLKKTKLIIKAQINKHRRNVIYEVENXVXLFFRNVKIMRSCKDLKDKQLESYQITVKARIFYHLHLSVSMKHLHLMFNLKLLQSYSEDFLSEQHAELLRLIIIDEDDDEHXKINDILNFRCYQDQIQYKIKXKNLDRNDEXYYVDKDEFNDFKKVLNEFHMLYSRKS
Ga0272438_100035170	F096306	N/A	MFAMYDNHAVDSLIIDDDSNEERSCKNNSEIQASMILLDIAILIVTNVKIVFVESNDK
Ga0272438_100035171	F036035	N/A	MKDRTKDDAMQRKHHELKKASRNHECDNSDHSNDTLNKHTESISDCDIIKESDERERK
Ga0272438_10003518	F048017	N/A	MFLANVSESAQRLEDCFQTILILDRVDVLLVELKANLYQXVHMINQMNEFCNEYKQVMNENKLKFHITKLKNCEIIDSILFRKDLLXVFKNMHTKLLQKIHDQLSISHLDNKXTIDLIQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1000351

Overview

Ecosystem & Geography

Associated Families

Sequences