Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1000353 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1000353 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	69780
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (16.90%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

69780

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (16.90%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F021026	Metagenome	220	Y
F035571	Metagenome	171	Y
F038009	Metagenome	166	Y
F044227	Metagenome	154	Y
F061399	Metagenome	131	Y
F070710	Metagenome	122	Y
F086375	Metagenome	110	Y
F096306	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100035310	F035571	N/A	MILSYSMFKXTCNELMYISVFKVSMLTLLNTSVTXCKVXFXSVSSLHSLLNNSFFLLCXCQIDALNVISDLIIAEYTCLVFVKIAFYVKTSRXLSVSILVTXLTSICQRCASHHSFMFSXIFKTRTSDFNLMTELSICMLVIMSNLFNFLVKCVSLYFSDVNIASXMQAHFAHALYALLSILQISSMNLS
Ga0272438_100035316	F044227	N/A	MQLQIKSSDDEAYTHALLELIASAIKNVTRCRLLELLNNRRHHEEFQSSSKDDDENKALEAI
Ga0272438_100035318	F061399	N/A	MNYVNSLSFNIFMNITYKYVLVFVDHFIKMRHLVLITSMKVEEAINCFYAYVXKHHDLLKFFMSDRDTQFIFDVXKHMCKMLKIDAKLSMMYHSEINDQIERVNAVMKHYLXIFVNYMQNDXAKXLSEVEFIINNASSLIILASLFLINLSQNSRLDFKFSESLLKNLTSQAXNKLINVEEFIKNMKKLTEHLCNEILIAQIIYEFNVNLSCRSYFNYFVEDEVXLNACNLNIVHLAVKLNDHNVNFFKIKRIFKNNSLIIELNLSAFMKIHLIFHVTLLNHIASDFLSSQH
Ga0272438_100035322	F038009	GAG	MIKVSSSQLNYVKLYRRSIELICLKDNRSFKEERISTLDFXXVFFLNDLKNTIRNFLFQMKDKTERDLFLMNELSINXLFVSERRVILLLMSKXETELLLASELRTELLLVSELKTELLLSSEXETRLLLASKLSAKLLLVSNL
Ga0272438_100035323	F021026	N/A	MNKFFTQQHHFLLHQLTHSCRLQEFDDQVALINDITHVVEITMILDEHIERLFFYVIELSQYFIIMNLSXLCHHVIDVNFEHNILILSFFFCLNHCCSSLIKIYDFNQQEENFSFEVNKVTFFQSRSQFAHKK
Ga0272438_100035324	F009580	AGCAG	MIEVRVKRLSLVDKMICIQIFDCDLAQRLDFSHEQRDFFIYIDNITIIDIHDMQSEELLIXAFFNDFAXMLQFAVVAQLSLVADFLDFRNNQSLILNDDNDKA
Ga0272438_100035325	F001951	GAG	MTMTKLRFIDSSRNEKERNEDTVEMIVTEMMIFEFKKLLINAEMFLTLMNEMMMKMKRD
Ga0272438_100035327	F096306	N/A	LNTLSSLCDIRVMFAMYDNYAVDSLIVDDDSNEEKSCKDNSELQASMILFNIAILIATNVKIVFVESNDK
Ga0272438_100035351	F035571	GAG	MTRLTFVKXACISSYACLISYVRSLTSLCSVILFCSMFKXTCSELVYVSVFKVSMLTLLNASVTXCRVXFXSVSSLHSLLDSSSFLSRXCQTDTSNAISDLTTAEYTCLAFVKIASHVKISKXLSISILVTXLIFICXRCTSHCSFMFSCIFRTCTSDFNLITEFSIYMLVIMLNFFDFLVKCMSLYFSDANVTSXVRAHFAQTSCALLNVLQISSMNLS
Ga0272438_100035354	F070710	N/A	MIKQSFLRILQYNIRKSLRIQESFLIDKEVHKFNIVVIQKQDRNNNDSQSFSSAHNFFHLVKNSSSQLRTCIYVNKHLRLNQXIVETAESDICSIRILTRNADDKTQMLKLLNVYNSCSLSTTFIKKSSIISHLNELLKNDCKQLIVEDFNLHHSYXERXKCFTRHTTTDTLLNIIINARLKLLLKSNIITREAHN
Ga0272438_100035366	F086375	N/A	MFILFINSKFITSXNHDENXFNEIKEYYKRQNNNYVIIFKXLHKLRQFNVXKKVNEINKAAMKDNVRDEIKQERKNKDIYDNASQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1000353

Overview

Ecosystem & Geography

Associated Families

Sequences