NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000402

Scaffold Ga0272438_1000402


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000402 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65898
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (20.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F021026Metagenome220Y
F055318Metagenome138Y
F086377Metagenome110Y
F104132Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100040240F009580GAGMICIQISEHDLAQRLNFSCKQQDFFIYIDDITVVDIHDTQSEELLIXAFFNDFAQMLQFAVVTQLSFVADFLDFRNNQNLILNDDNDKV
Ga0272438_100040241F021026N/AMIVFCILRQAQSRVFALALIDSEVSTYVFMNKFFTQQHHLLLHQLIHSHRLQEFDDQVTLIDDITHVVEITMILDEYIKKLFFYVIELSQYFIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHYCSSFVKIYDLNQQEHQQNVXQLTFCSMTESEKVNSI
Ga0272438_100040247F086377N/AMIQRFXNQRQRILILDCDSVQISIVHAEVKFFFEFLDEENRNDCLKVINLNEIFAQILIQITSKF
Ga0272438_100040255F055318N/AMLRDDEALCIDCVQSFRDCTDFDNLNVHATSNLHADEKVK
Ga0272438_100040269F104132AGAAGMNEILNFRVKNSQLEYLIKXTEIEENSXVKFANVMNVIEVMNVYHARNFDHSNKNSXIAYVQESSDSEYESEN
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