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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1000406 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 64989 |
| Total Scaffold Genes | 72 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (18.06%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023763 | Metagenome | 208 | Y |
| F036035 | Metagenome | 170 | Y |
| F064254 | Metagenome | 128 | Y |
| F070710 | Metagenome | 122 | Y |
| F094622 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100040631 | F094622 | N/A | MFMLKQRVYLNDSDSKDDVTMIAMRMNXELNKRLKKSTLVITHHDELKELVAKMKHFADVAIVNQEYHEKIYKVYSNNQTSLKTVKVMISTKDQTRLQ |
| Ga0272438_100040645 | F094622 | N/A | MFILKQRVYLNDSNSKNDVTMIMMRMNXELNKRLRRSTLIITHHDELKELVVKMKHLADVMTANQECHEKIYKVYNDNQTSLKTVKVMISTKDQTRLQRVQIMHESIQS |
| Ga0272438_100040646 | F036035 | N/A | MKDDAIXREHHELKKASRNQKCDDSDHLNNTLDKHTESISNCDIIEELNKRERK |
| Ga0272438_100040647 | F070710 | N/A | VLNRVRNKKNIRKSLKIQKSFLINEEVCDFNIVIIQKQSCNINDMQSFNSTHNFFYLVKNTSSQSRTCIYVNKYLRLDQXVIETAESNICLIRILTCNTDDKMQTLQLINIYNSCLLFFTSTKRSLIISCLSELLKDNYK |
| Ga0272438_100040650 | F064254 | N/A | MLVESIIXMIIVIMLMISRNFLKFVMFFLHCIIFHSIFHLKHVNRTCLINIQSLSHLHIIVAILNTCLSCKNXLKSIFLMHSCVNNTLXDFMXFLCNHRCXCIISDVRYXKXAALNLSFQTILHVCLICFCMSVSLVITSMC |
| Ga0272438_100040655 | F023763 | N/A | MSFQNCLMLILMSRIEYIFLLRKIFXAMCQFIVDLVKMICDVIVESRQKLTSTSLMMTQLLSXHEILKIFVIYDHLNRTDKVFKLXASFFECANNDHEFFIINLVVTLDXIMLLEKVSDXMKNFVLIILKENVFEHIVXSINFYHNFMIXIVVM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |