NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000410

Scaffold Ga0272438_1000410


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000410 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64591
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (89.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016760Metagenome244Y
F018488Metagenome234Y
F074200Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100041015F018488GGAMEPTRRPPVNVPGWNERAAVALLILVAGHLLATEPTASAGPLTPDRLARFVAGHDLPALVAACKGSPSEQARHGAQQLRRLIRAGQAGIYQRVLPGLPVALTGPFFRLALAKAARQAGLDRFPLAS
Ga0272438_100041029F018488AGAAGGMREPTRRPPVSGPGWNERAAVALLVVVAGHLLAAEPVSAAGPLTPDRLARFVAGHDLPALVAVCEGSPSDQARHGAQQLRRLIRAGQAGVYQRVLPGLPVALADPYFRLALAKAARQARLDLFPLAS
Ga0272438_100041057F074200AGGGGGMARNAQTALYINDPVKIVAGVFTVRQAIYVAGIVLLTYGLVNATSRLPYGQSGLGQVHLLLIVGVPALLALLVVTFAGSGTVEPYARQFTGYLWRATLALPRRLAYRAVRLARRTPAPVYGPVPSDGLVRVANAEATTGAEHASRATAIRAVPAPYVAPVLMTTPVAQTQRARLLAWLTAHPCVTDEQIAEGAGMNPSAARPRRREMVEAGLVRKVDLDGRTRAGRRAARWAVVETRGEVARG
Ga0272438_100041061F016760GGGGGMKVTSGIKRAARATGRGVYVLAVPKTVRRSTEELRRVEMSPALGLVLRIAAILVLAGTVLAVHAVGHPLLGLARAALLLLGAVVMLALSGALAPQGRLVGQLLLSYAKRESARKGLTWQGRLFRALARRLEPAASKKEKGKTNDRQR
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