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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1000415 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 64112 |
| Total Scaffold Genes | 66 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (15.15%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F004755 | Metagenome | 424 | Y |
| F011463 | Metagenome | 290 | Y |
| F036035 | Metagenome | 170 | Y |
| F044227 | Metagenome | 154 | Y |
| F059496 | Metagenome | 133 | Y |
| F080688 | Metagenome | 114 | Y |
| F094622 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100041510 | F011463 | GAG | MTDYETTHEQLEFRKANDIIIQIKELLSFDYQQLKKTKLIIEVQINKHRRNVIYEVNDXVXLSFKNVKTIKLCKDLKDKQLSLYQITVKVSIFYHLHLSVSMKHLHSMFSLKLLQSYSENLLSEQHSELLRLITIKDDEHXKINDILNFRCYQDXIQYKVKXTDLNKDDEXYYVDKEKFNDSEKVLNEFHKLYLNKSR |
| Ga0272438_100041511 | F080688 | N/A | MLQTLMIXAEMHXTTYLDVHQSSDFEDLYEKQTVELMTSQLSEHSIEVQLSDHF |
| Ga0272438_100041514 | F004755 | N/A | LKELAELFNDSDKKVNFHRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSHLQFIXINQLVQSDFLKEIHFYLIHLNNNQRVIQKIKNKVNLIKCIDDLSKIIFHKTVVTQSVNYSKSDHLKSRDAILTSIKEADVLVEICFLCHKSNHSFKECSDQSTKINAVNNKYNHFEVDFNSNFDSKN |
| Ga0272438_100041515 | F002432 | N/A | MQNDXAKXLSMIKFSENFNIFSIISMTSFYFNKSFHSXISFDSDTTDYKTTCERLKARKADDIITXMKKLLIFNRQQLEKMKQIIKAQINKHKQDIIYKVDDXIXLFFKNIKITRLCKNLKDKQLEFYQITVKVEIFYHLHLSISIKQLHSMFSSKLLRSYFDDFLSE |
| Ga0272438_100041525 | F004755 | N/A | LKELAELFNDSNKKVNFRRKYYNLIQESKKFSEFYTQFQXLSFYLKYHEKQLIVDLKDKINSRLQFIXIDQLVQSDFLKEIHFYLIHLNNDQXVIREIKNKVNLIKCINNLSKIIFHKVVVTQSVDHSKSDHLKLCNAILTNVKEADVLVKICFICHKSDHNFRECFDQFTRINAVNNEYNCFEFNFNLNFNSKN |
| Ga0272438_100041529 | F059496 | GAG | LIFKDNYNXILRIQRKIDTKASIYVMFRDCAKLKRNVFVTXKECDVDEQDVDERKEC |
| Ga0272438_100041543 | F080688 | N/A | MFXTLMTXAEMHXTTHSDVHQSSDFEDLHEKQTVESTTSQLSERSIEVQLSDHFQIRQNE |
| Ga0272438_100041544 | F011463 | N/A | LKKTKLIIEVQINKHRXNIIYEVNDXIXLSFRNIKTTRLCKNLKDKQLELYQIIVKAKVFYHLHLSVSMKHLHSMFSLKLLQLYSKDFLSEQHAESLRLIIINDDDDEYXKIDDILNFRCYQDXIQYKIKXKDLDKDNEXYYVDKDEFNNFEKVLNEFHVLYSRKLR |
| Ga0272438_10004155 | F044227 | N/A | MQLQLRSSNDETCTHALLELIASAIKNATRYRLLELSNNHRYHEEFQSSCKNDDENEAFEAI |
| Ga0272438_100041560 | F094622 | N/A | MFTLKQKVYLNDSNNRNDVTVIAMKMNXKLNKRLKESTLIIIHHDELKELVVKVKHFADVVTMNQECHEKIYKVYNDNQTFLKTVKVMISTKN |
| Ga0272438_100041561 | F036035 | N/A | MKNDAMQREHHELEKASRNHERDDSDHLNDTLDKHTESISDCDVIKESDERKRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |