NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000448

Scaffold Ga0272438_1000448


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000448 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61833
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (22.54%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F008735Metagenome328Y
F020121Metagenome225Y
F023763Metagenome208Y
F038009Metagenome166Y
F075494Metagenome118Y
F087979Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10004482F075494N/AVINDVKKTFVHNVSEQRYSAKHVESKSQDEIYYTXVISEVKKMSVHNVSENTSTCSAMHVRSMLLRVMTLAVRETHLNKVHFLRDRISQFESTTLRSTDVETLTHKDHNIVEKQLNSVAETVDCKQLISHAIVKVLTIYEMIYNFSNKFVVKLIKILQQEDEFAVRLKADEMMSIXKSIGKIVRRKKVDISXFLPTFPELAVNLMCQLTIEISXFSQLLADY
Ga0272438_100044834F008735N/AMSLLIYDESXLDINDLDLMREIMIVVYVHALYQTLLSNIQSIFVSFIFKYVEKLFEFNENRDSNRVCKNLNNERRLNMQSLYNDLNYHHEKLKIQFLIDXRTKSDEXEQDDNIMLLNLILKLAHYMKDLNXIFDYTLSKLFSNMLIINQEMIRLLHLSEKIIKXDFNVXKCCRKCKSFIMSKTRLN
Ga0272438_100044839F008735N/AMREVAIIVYVHALYQTLLSDIQSIFVSFIFKYIEKLFKSNENRDNDRVCREVNDKRRLIVQDLCNDLRYHCKKLRIQFYINXRTENNEXKXNNDIMLSNLILKLLHCAKDLDXIFDHTLSELFNSTLIINQKIVRXLHLSKRITRXDFNVXKRCRKCRSFIMSKIKLN
Ga0272438_100044842F038009GAGMIKALSFQLNYVKLYKRLIQLICLKNNRSSREKRILTLDFXXVFFLNDLKNTTRSFLFQTRDKTERDLFSVNELNNSXLLVSEREVILLLVSRRKTELLLASELRTELLLVSELKAELLLSSELRTRLLLASELKTELLLSSEXETKLLFASKLSAELLLVNDL
Ga0272438_100044861F087979N/AMKEKNENSTFIYMNXAESRLNNSSIDLKLQKFMHTAEMIKTKLLKLD
Ga0272438_100044862F008735N/AMSLLIYDELXLDINNLDSMREIIIIIYVHVLYQTLLSDIQLIFVFLILRYIEKLFEFNESQDSNRVCRNLNDKKRLIMQSLCNDLSYHHKKLRVQLLINXRTRSDEXEXSDNIMLSNLILKLAHYAKDFNXVFDHTLNELFSSILIVIQEMMRLLHLSEKITRXDFNVXKCCRKCRFFIMLKTRLN
Ga0272438_100044866F023763N/AMSFQNCLMLILISRIECILLFKKIFXATCQSIQLIIDLVEIISDVIVKSRQKLTSMSLMMTQLLNXHEILKIFMIRDHLDRIDKVFKLXSSFLKSTNNDHKFFIIDFVVTLNXVMLLXKVSDXMKNLILIILRKNVFEHIVQSIDFYHNLVIXIIMMKNNLESEDFLKNVECNLTFLKSDKEYIFFDEMSE
Ga0272438_100044869F020121N/AMKKLTEHLCDEIFIAQIIYEFNVNFFRRSCFKYFVEDEVXLNVCNLSIICFIVKLNDHNIDFFKIKCIFENNSLIIELNLSTFMKIHSIFHVILLNHIASDFLSSQRQKSXELIVIKNDERFXYVNSILNFKHNRCYNSSLLKYYINXKDHFSTXKSFHLLNNNEQAFNEYHLVNSVTEESHVLSCVISQCQCQEL
Ga0272438_100044871F002432N/ASMMKFSDNFNIFSITSMIFFYFNKEFHPRMSFDSDTTDYETTCERLEVRKADDIVIXMKELLNFDRQQLKKTKLIIEVQINKHRRDVIYEVDDXIXLSSRNVKTTRFCKDLKDKQLDLYQITVKVNIFYHLRLSVSMKHLHSMFSSKLLRSYSENSLSEQHSELFRSITIEDDEHXEIDDILNFRRYRDRIQYKVKXTDLDRDDEXYYVDKGKFDDSEKVLNEFHKLYSNKPR
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