Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1000474 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1000474 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60680
Total Scaffold Genes	68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (27.94%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

60680

Total Scaffold Genes

68 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (27.94%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F006206	Metagenome	378	Y
F008169	Metagenome	337	Y
F011463	Metagenome	290	Y
F028368	Metagenome	191	Y
F033266	Metagenome	177	Y
F037508	Metagenome	167	Y
F037509	Metagenome	167	Y
F048017	Metagenome	148	Y
F061402	Metagenome	131	Y
F070712	Metagenome	122	Y
F079402	Metagenome	115	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100047417	F033266	N/A	MSSHLSTEEYFKEFQNCFSQISDADSLKSRTKLSSAASFIHEDDESFAETMILLMFYEIXKTXSLVLDEETDXLYKLDKQQENEIKELKTRLQAKKTLLLISSTLSVLDLKKYLILRCLLMRRTLFERTDTEKFRIN
Ga0272438_100047418	F028368	AGAAG	LCKLDEILLKENYFEKSFLIDAHLISQNQSFSLRSLIDSDFVVYIIIHSNIVNKVCKKLKIQSISLTKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNNIIVFSNQLNTSILIFSILLNSKHSSXSRSSLFSSIIQTKIFMMLKXLVQKEFEFSIQSINAASFKTLLNCSKRDKIEVFALFMMNINRKIAYNTQCNLNALNVSLINETTQNLKDIKAKLSSKYHEFLDVFDRAQLNKLLSHCFYDHKIELISDSTSSHCXVY
Ga0272438_10004742	F061402	N/A	MQDDXFIXLSMIEFVNNNAILSSIEQSAFFLNKSFHSHMSFDLNSTEYEITQARIQAGKVENIFKHMK
Ga0272438_100047425	F070712	GAG	MSDIKEKKSLNKVRKQVIFAQKXDSLNFYRKIEVTTLVNHSKLHDAILTNVKDIDLQAEICFICHKSDYTSRECSDRFKVNVLKDDEFNHSNSESNSDSKN
Ga0272438_100047427	F037509	N/A	MILISLLIQVHLTDNKMNIKKFVYLMIDDIERQNNIKKSIKSTKIYDHVIAREFIAQSVASVQID
Ga0272438_100047435	F002432	N/A	MQNNXVKXIFMMKFSDNFNIFSITSIIFFYFNKEFHSRMSFNSDMTDYETTYERLEARKADDIIIQMKKLLNLSHQQLKKTKLIIKVQINKHRXNVIYEVDDXVXLSFRNIKTTRFCKDLKDKQLDLYQITVKVSIFYHLHLSISMKHLHSMFSLKLLQSYSEDLLSE
Ga0272438_100047441	F006206	N/A	VKIISLCNLNEILSKENYFDKSFLVDALLILQNELFSLHSLINSDSAVYIIIHINLVDKVCKELKIQSISLTKEKLIKEYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILEKS
Ga0272438_100047449	F011463	N/A	MSSSILLLNFDRQQLKKTKLIIKAQSNKHKRNVIYKIDDQIXLSFRNIKIMRSCKNLKDKQLDLYSIIVKVETFYHLHLSTSMKHIHLMFSSKILRSYSNDSLSDQHIKSFRSITIEDEEHXKINNILNFRRYXDRMQYKVKXKDLNKDDDXYYVNKEEFNDFKKVLNEFHMLHSNKPR
Ga0272438_100047452	F037508	N/A	VNHYSTEKICIVYVIFRLEDNVDQQIYAKHCVDAFSFYQSLSELLKHLKEIYEDQNLIXKCRCKYVALKQLNKFFSSFYSEFTRIFSFLNYDDVILMNNIQNKINNCLQNALSVCLIEFSSLDKLKIFLQDVNNKQXVNYQLRDDQ
Ga0272438_100047453	F008169	N/A	MILDRETDQLNELSNQRDVEIKELKTRLQIKEITSSDFIYFKRSRSQKISDSFXFTDEKNFTXKNXYNKIQNKLEINVDLFSNEXIKLSYVHFRLFNDAADVTQSKRERNCVNFYKIIDDLLKELAELFNDSDKKVNFHKEYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSRLRFIXINQLVQSDSLKEIRFYLIHLNNDQXVIXKIKNKVNLIKCINDLSKIIFHRVVVTQSVDHSKSDHLKSCNAILTSVKKADVLVEICFICHKSDHSFRECLDQSTRINEVNDKYDXFDFDSNFDSKN
Ga0272438_100047456	F048017	N/A	MKNKQLSQXQVNYLNILSKFNFQIIFRSDKMNTKINALIRMLLANVSESAQRLEDCFQTILIFDRVNVLSVESKANLYHXVCMINRTDEFCSEYRQAMNENKLKFNITKLKDCEIIDDVLFRKDLLXVSENMHTKLLQEVHDQSSTSHLDNKRIINLVQHFYY
Ga0272438_10004749	F079402	N/A	MQNKLKINKNHFFIKELKNAYVKSXVNEMMIKHIASXMRNAITNSFLEVEEMLSIINKMYDDFNQRHTTQQQFLKLY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1000474

Overview

Ecosystem & Geography

Associated Families

Sequences