Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1000512 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1000512 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58523
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (21.43%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

58523

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (21.43%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F008735	Metagenome	328	Y
F010214	Metagenome	306	Y
F020121	Metagenome	225	Y
F038484	Metagenome	165	Y
F057011	Metagenome	136	Y
F071806	Metagenome	121	Y
F086375	Metagenome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100051215	F001951	N/A	MIIMKLKFIDSLKDKKERDKDIVKITVIKMMIFEFKELLVNAKMLLTLMNEIMMKTKRD
Ga0272438_100051216	F008735	N/A	VNLLIYDESXLNINDFNSMKEIMIIIHVHVLYQTLLSCIQLIFVFLIIKYVKKLLESKSNDDSDRIYKEVNDERRLIIQDLCNDLSYHHKRLRIQFYIDXRTENDEXRXNDNIMLLNLILKLLHYVKDNNNNNKFIHSCDID
Ga0272438_100051219	F010214	GAG	VLFIYDALSLFCSLLMIFYTTMFEFNLXFKDERCFLCTCDAHDCNICKAVFSYSMIVIHCTEKYVMKERFTXXEDRVXLYXVTLFFSXFDLYHVNVEXIVSINVQSQSFDIXLXLIKENVFXSFSXALDFSRR
Ga0272438_100051220	F010214	GAG	MRVSVLFDYDASSLLCSSLTIFYTTMSRFDSXFEDERRFLCIRDARDCNVRRAVFSYSMIVIHXAEKYVMKERRTRXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFSRR
Ga0272438_100051223	F038484	N/A	MRSILMYIARVLSAFXRSSRIFIVLLLRCNLCAEIALMSATRSLYFFHRXFYXSLXYCIIAMLSLVEIIVKKRMYHLRLDYIFAPSXMKTFRSTIFLMTSEREMTRLTLVKXARISSHACLISCVRSLTQLCSVILFCSMFRXTCSELVYVSVSRVSMFTLLNVSTTXCRVXFXSVSSLHSLLDSSSFLSRXCQTDASNAISDLTTAEYTCLVFVKIALHVKTLRRLSVSILVTXFASICXKCASHCSFVFSCISRTRTSDFNLITELSICMLVVMSNLFDFLVKCVSLYFSDANVASXMQAHFAQTSCALLSVLQISSVNLS
Ga0272438_10005123	F002432	GAG	MIKFSENFNIFSIISMISFYFNNNFHSXMSFNSDTTDYETTCECLEARKADDIFIXMKELLIFDHQQLEKTKQIIKTQINKQKXDVIYEVNDXVXLFSRNIKTTKSCKDLKDKQLEFYQITVKVEIFYHLHLSISIKQLHSMFSLKLLHSYS
Ga0272438_100051230	F086375	N/A	MFTLFINSKFIASXTHDENXFDEIKEHYKRQNNDRVIIFKRLYKLRQFNVXKEVNETDKAVMKDNVRDQVEQECKNKSMHDNASQ
Ga0272438_100051249	F071806	N/A	MKLQLQIITLDSVQLHLFSIISTFLQILAFMNLEIKEFNIENIKSQLDQDILNLDEDSADILTQTL
Ga0272438_10005125	F057011	N/A	LCNLVEILLKENYFEKSFLIDTALIFQSESFSLRFLIDSDFIVYILIHTKLVDKVCKKLEIQFISLTKEKLIXDYDEKLSKKTITHKILLNLTIESHKELTVSMLIADIEHHKVILSKLXINKNEILLNMQHDAIMFSDQLNTSISIFSILLNTKHLSXSXSTLISSAAYSNVFKILKHSVLIVQKESFLIQNIDVISFQALIKXLKKNHTKLFAMFIKNINREIVYNT
Ga0272438_100051253	F001951	N/A	MIMTKFRFIDSLKDEKERDEDTVKTTVTKIMIFEFKELLVDAKMFLTLMNKMIIKMK
Ga0272438_10005129	F020121	N/A	MFQTXNKLINVKEFIKKMKKLTEHLHDEMLIAQIIYEFNVNLFRCSCSKYFVKDEVXLNVCNLNIAYFVVKLNDYNVDFFKIKHVFKNNSLIIELNLSEFMKIHSIFHVILLNHITSDFLLNQRQKSXELIIIENDERFXYVNSILNFKHDRCYNSSLLKYYVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1000512

Overview

Ecosystem & Geography

Associated Families

Sequences