Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1000514 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1000514 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	58301
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (28.57%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

58301

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (28.57%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F011463	Metagenome	290	Y
F028368	Metagenome	191	Y
F033266	Metagenome	177	Y
F040408	Metagenome	161	Y
F042102	Metagenome	158	Y
F075494	Metagenome	118	Y
F076668	Metagenome	117	Y
F086375	Metagenome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100051419	F002432	N/A	MXQSFCKRLKITASLLTAYHSEIDDQSKRANQNVERRLRIYCNYMQNDXAKXLSMIEFSENFNIFSIILMTLFYFNKNFHSXISFDSNTIDYETIHERLEVRKADDIVIQMKELLIFDHQQLKKTKQIIEAQINKHKRDVIYEVNDXIXLFFRNIKTTRSCKNLKDKQLEFYQITVKVEIFYHLRRLISMKQLHLMFSSKLLHSYFDDFLSEQHSESFRFLTIEDDKHXEIDDILNSRXYXDXIQYKIKXTRLDQNDEXYYVDKEEFKNLKEVLVEFHKLYSNKSH
Ga0272438_100051421	F040408	N/A	MYDYKSIFNIHIENDAIKEEVSAAKEYIEMLQDVQNTLTQXX
Ga0272438_100051422	F075494	GAG	MFIHNVSEQKYSAKHVKSKSQDEIYCTXVINEVEKMFAHSINENTSMCSAMHVKSMLLRIMILAVQETHLNEVHFLKDRISQFKSTTSRSTNVETLTYKDCNVTEKQLNSVAETVNCKQLVSHAIVKVLTIHETTYNFSSKFIVELIKIL
Ga0272438_10005143	F004755	GAG	LFNDLNKKVNFRREYYNLIQRFKKFNEFYTQFQRLSFYLDYHKKQLIVDLKDKIHSRLQFIXVNQLVQSDSLKEIRFYLIYLNNNQRVIXKIKNKIKRVNDFSKTIFHRATVITQSVDHSKSDQLKSRDAILTSVKEADILIESCFICHKSDHSSKECLDRSTRINAVNNEYDRFDFDSNFDSKN
Ga0272438_100051431	F076668	N/A	MTCLLLTSSFLTHASARKMSKSSMHLTDHYAIKETSVFKSTTTTKKIMHMSNALFTDILMLCNRKDATNQTLLRCVKFENIRRSQKISFSKXSLKDXLKRLCMIMLERTCYNMIFAFSVLSXVLFKKSLKTLCASL
Ga0272438_100051432	F086375	N/A	MFTLFVNSKSIASXNRGENXFNEIKEHYKRQNNDHVIIFKRLHKLRQFNVXKEANEIDKATMKDNVRDEIEQERKNKDIHDNAS
Ga0272438_100051437	F033266	N/A	MSRHSLTKECFEEFQNRFSQISNADSLKLRMKSSSAASFIHEDDKSFVEMIIFLMFYEIXKAQSLVLDEETDQLYELNKQQEDEIKGLKTRLQAKEITSSDFIYFERSRSQKISDSSLFTDEKNST
Ga0272438_10005144	F028368	GAG	LCKLDEILSKENYFEKLFLIDAHLISQNRSFNLCSLIDSDSVIYTIIHSNLVNKVCKKLKIQSISLTKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNDVIVFSNQLNTSISIFSISLNSKHSSXSRSSLLSSIILTKISMMLKXLVREESFLIQSIDAASFKTLLNRSKRNKIKVFALFMMNINEEIA
Ga0272438_100051441	F011463	N/A	MKLIIKVQINKHKXDIIYKANDXVXLSFRNVKTTRLCKDLKDKQLNLYQITVKVNIFYHFHLSVSMKHLHSMFSSKLLQSYSEDSLSEQHSESLRSITIKNNEHXKINNILNFRCYRDRVQYKVKETDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSNKSC
Ga0272438_100051451	F042102	AGCAG	MTRSTESESVSIAHYDFQNVRRESLLSQNRAASEEEDTNASLNTEKENTNALLFDHEMIKISINTELNAXINAHEANDIVIFIKYICQQHDIEIKIHNDMIQMLEDVNEINITLKITQTHLQKENKDKNVIIHHLKVASSRQSTSISEDYFSKLIKLLNSSLFEDSTQNVDNXLSXMXNKLKTNKNHFSIEELKITYIESXVSEAAIKHIASCMQNTFLNSFLEVEEVLSMINKMYDDLNHHHTTQQQYLKLYQNKIFFHEIXMKFQRFSAELEYNNETLLNDFQHKISSNLQRATLNEXIIDLNEFINICMQVNVRLTELNARSVVKASTTQAARSVSSTLTAQLTSSVSSXKKLRRLNLNSIQKELFKKELCFKCKKLEHRAYNCFETTQVHEIATNLKNDLLSSK
Ga0272438_10005148	F000597	N/A	MMKNVLISLMMSMSNDSFASESLTTEYVLSSNEISYSLKSLMNIEAADYSFINEVTAQIVCDQLQIELLTLIKAKSIQEFNNHYVKKLITHVIYLNLTIQDHTVDTAFILITQLKQHQIILEKTXMNKINLVINM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1000514

Overview

Ecosystem & Geography

Associated Families

Sequences