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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1000523 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 57999 |
| Total Scaffold Genes | 62 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (14.52%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F003820 | Metagenome | 466 | Y |
| F008169 | Metagenome | 337 | Y |
| F020121 | Metagenome | 225 | Y |
| F021896 | Metagenome | 216 | Y |
| F023763 | Metagenome | 208 | Y |
| F048017 | Metagenome | 148 | Y |
| F059496 | Metagenome | 133 | Y |
| F094624 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100052310 | F008169 | AGG | MILDRETDQLNKLSNQXDDEIKELKTRLQTKEITSSDFIYSERSRSQKIPDSFXFTDEKNFTXENXYDKIQNKLEINVNLFSNERVKLSYVHFRLFDDTADVAQSRCKRDYVNLYKIVDNLLKKLAELFNDSNKKVNFHKEYYNLIQESKKFNKFYTQFQXLSFYLKYYEKQLIIDLKDKINSHLXFIXINQLVQSDSLKEIHFYLIHLNNDQXVIXKIKNKVNLIKHIDDLLKIIFHKAVVTQSVDHSKSDHLKLCDAILTSIKEADVLVETCFICHKSDHSSRECSDXSTRINAVNNEYDRFKFNFDSNFDSKN |
| Ga0272438_100052314 | F048017 | N/A | MFIDHQTLKIFMKNKQLSXXQVNYLNILSKFNFQIIFRSGKMNTKVDALIRMSLTNVSELAQRLKDHFQTILIFDKVDVLSVESKANLYQXVHMINQTDELCSEYKQVMNENKLKFHITKLKDCEIIDDVLFRKDLLXVLENMHTKLLQKIHDQLSIFHLNNR |
| Ga0272438_100052328 | F001951 | GAG | MIIITKLRFIDSSRNEKERNEDTIKTTVTEMMILELKKLLVDAKMFLTLTNKTMTKIKRD |
| Ga0272438_100052331 | F021896 | N/A | MTKNNLESENFLKNVECNLTFLKSNKEYIFSDETSERDKYFTIVINEFSIKVHVI |
| Ga0272438_100052332 | F023763 | N/A | MNFQNCLILILMSRIKCISFFKKIFXATCQNIQLIINLVKMINDVIVEFKQKLASMSLMMIQLLSXYEILKIFVIRDHLNRINKVFKLXSSFLESANNDHEFFIIDFVVTLNXIMLLXKVNDXMKNLILIILKENVFEHIVQSINFYYNFVI |
| Ga0272438_100052334 | F020121 | N/A | MKKLTEHLHDEMLITQIIYKFNVNLFRCSYFKYFVEDEVXLNACNLNIAHLAIKLNDHNVDLFKIKHVFKNNSLIIELNLSAFMKIHSIFYVILLNHIASDLFSSQCQKSQELVIIKNDERFXYVNSILNFKHDKCYNLSLLKYYIDXKDHFFTXKFFHLLNNCE |
| Ga0272438_100052336 | F094624 | N/A | MKHYFQVYVNYMQDDXAKXLFKVEFAINNASLLITLAFFFLININQNSCLDFKLFKSLSENLMFQTQDKLINVEEFIKKMRELTDHLHDEMLITQVIYEFNVNLFHRSCFKYFVEDEVXLNACNLNIIHLAVKLNDHNVEFFKIKRVFEQNSLIIELDFSASMKVHSIFHAILLSHIANDLLLNQHQKS |
| Ga0272438_100052357 | F003820 | N/A | MKLFNYLDYDDCTLINDLQNKINNRLQNTLSVCSKNFTSLTRLRIFLQSVNNKQXVNYQLCSEHHTVIIKVTVVSDKCIATSLSVTTLIINYVKFIIFFIFKSARSSIICYICKIFDHLSKNCFQNKVNTSASXTFTSYLHEIIISKNKENEKMSSSEDNETKN |
| Ga0272438_10005239 | F059496 | AGAAG | MSTKASIYVMFRDCVKLERNVFVTXEECDVDEQDVDERKKC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |