NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000552

Scaffold Ga0272438_1000552


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000552 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56203
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (10.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F010214Metagenome306Y
F050043Metagenome145Y
F075493Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100055213F001253N/AMKDVLISSTMSSSDDFFALKSLTIECVLSSNEISYSLKSLIDTEAADYLFIDELIVQNVCNHLQIESLSLIKLKSIKRFNNYYAKKLITHAIYLNLTVQDHMKCFAFMLIIRLNQHYMILEKT
Ga0272438_100055216F010214GAGVSVLFIYDASSLLCSSLTIFYTTMFRFDLXFKDERRFLCTRDARDCNVRRAAFSCSMIVIHCAEKYVMKERCTRXEDRVXLYXVILSFSXFDLCYVDVEXIVSIDVRSQSFDVXLXSMKENAFXLFSXALDFSRT
Ga0272438_100055218F075493N/AMRSVQAVHEYMLRRLMTSFAVTSRTIHVXNVSRVQISVQIYAFNSDVHCKSAFCFLKIVTHLYHLIAQMQSLCXDCVNVCDAFSVLFSSLISLIFVILHYCDAITCXNRCEEESVSSASQLYLRIFLNEDIQKYYFLDDEXARNDAINFRQTNVY
Ga0272438_100055227F050043N/ALCFLQSVLLIKIQLXLKKDEVEENEKLRETERVINKSTIIIHSCLCFIASATSFTXKINNAYVLFTHHHCCHLHQVHITYTIYNVIYMHYNXRXIIIQLKISFFLVFSQRFEDFYQELLEXINECTSLFIRVNKDINYXDXE
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