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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1000563 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 55744 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (16.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F008169 | Metagenome | 337 | Y |
| F010214 | Metagenome | 306 | Y |
| F028368 | Metagenome | 191 | Y |
| F032884 | Metagenome | 178 | Y |
| F070710 | Metagenome | 122 | Y |
| F075493 | Metagenome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100056317 | F032884 | GAG | MTIRNERLEREECKETKKNESTMTRVERERLYAQTIDVIDQQEDEKQRLXLYYM |
| Ga0272438_10005633 | F075493 | N/A | MRSVRAVHEYMLRRLMTSFAVASRAIHAXNVSRVQINIQIYAFNSDVHCKNAFCFLKIITHLYHFIAQMQSLCXNCIDICDAFSVLFPSLISLILVILLYCDAIACXNYCKEESASSASQLYLRIFLNEDIQKYYFLDDE |
| Ga0272438_100056333 | F002432 | N/A | MQNDXVKXISMMKFSDNFNIFSITSMTFFYFNKEFHLXMSFNSDTTDYETTCERLEARKADDIVIQMKELLSFNHQQLKKTKLIIKVQINKHKRDITYEVNDXIXLSFRNIKTTRLCKDLKNKQLNLYQITVKVSIFYYLHLSVSMKHLHSMFSSKLLQLYSEDSLSEQHSESLRSITIKDDKHXKINDILNFRCYRDQIQYKIKXTNLDRNNKXYYVDKEKFNDSEKVLNEFHKLYSNKSR |
| Ga0272438_100056337 | F010214 | GAG | MRVSVLFDYDASSLFCSSLTIFYTTMFRFDSRFEDERRFLCIRDARDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVILSFSXFDLCHVDVEXTVSIDVRSQSFNVXLXSMKENAFXSFSXALDFSRE |
| Ga0272438_100056338 | F028368 | N/A | LCKLDEILLKENYFEKLFLINVHLISQNQSFSLHSLINSDSIIYIIVHFNLVNKVCKKLEIQSISLTKEKLIRDYDEKIFKKIITHKILFNLIIESYKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNNVIVFFNQLNTSISVFSILFNSKHSSXSRLSSFSSIIQTKIFMMLKXFISITAQKESFLIQNINAALFKTLLNHSKKNQIKVFALFMININKEIAYNTQCNLNALNVSLIDETTQNLKDIKAKLSSKYHEFLDVFDXTQLSXQRDSSVRDVDYESFDSILCSNRSQKSQEISIQRSSNDVRTLRDQKSHHAEFSLTRQHFF |
| Ga0272438_100056339 | F008169 | AGAAG | LKTRLQAKENTSSAFIYSERSRSQKIPNSSLFTDEKNSIXKNXYGKIQNKLKINVNLFLNERVKLSYIHSRLFDDAAEITQARCKHDCVNLYKIVDDLLKELAQLFNDLNKKVNFRKEYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKINSHLXFIXVNQLVQFDFLKEIHFYLIHLNNNQRVIQEIKNKLKRVNDLSKTIFHKATVVTQSVDHSKSDQLKSRDAILTSIKKADVLVEICFIYHKLDHSFKECLNQSTKINAVNNEYDHFDFDSNFDSKN |
| Ga0272438_10005637 | F070710 | N/A | MIKQSFLQILQYNIRKSLRIQESFLIDKEIREFNIVAIQKQDHNNNDLQSFSSAHNFFHLMKNSSSQLRTCIYINKHLRLNQXIVETAESNICLIRILTCNTDDKTQMLKILNVYNSCSLFTTFTKKSSIISRLNKLLKNDCEQLIIKDFNLHHFH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |