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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1000684 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 51245 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (21.28%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F019260 | Metagenome | 230 | Y |
| F020121 | Metagenome | 225 | Y |
| F048018 | Metagenome | 148 | Y |
| F057012 | Metagenome | 136 | Y |
| F065269 | Metagenome | 127 | Y |
| F080688 | Metagenome | 114 | Y |
| F098340 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100068410 | F000597 | N/A | VLISSTMSMSDYFFASESLTIECVLSSNEISYPLKSLIDIKAADYSFIDEVIMQIVYDQLQIESLTLIKVKSIQEFDNHYAKKLIIHIIYLNLTV |
| Ga0272438_100068418 | F019260 | N/A | MIQELKSISKINIKSEKYLNSELYIKERENKLNQFIFKLISKLKLNVNHYSTLESHLLYEYSRLLKNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMQNCIFIEYLFDFQQHIDVIKYDVVTXKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSQYRVTVQNLFKSKAVIHFVSVTSTVSAYLVKYATLLIDLKVTISSLRNFMNLLIINMKKXDSLTLEKHQHCMINHLCLYCNKSEHQTAICNSKLKIQLXVISLFVLAIFINNLAFNTSFILKKV |
| Ga0272438_100068421 | F080688 | N/A | MLQTLMTXAEMHXTIHSDIHQLSDFEDFHEKQTVESMTSQLFEHSIKVQLSNYL |
| Ga0272438_100068423 | F001951 | N/A | MIITKLRFIDSSKDEKEKDEDTVETTVTKMMILELKELLVDTKMFLTLMNKTMIKMKXD |
| Ga0272438_100068429 | F098340 | N/A | MIKVAAYQTLVKNKKIKIFFLIINEINKALSSVEDFAKLNKMISVMSLNKLKKKLLIVYHDFLNVFDREKITQLSLHXSYDYKIELKDES |
| Ga0272438_100068430 | F057012 | N/A | VTESDIFIFCFISMFDDSFNFKSFTVDVILSSLEKIFRFFALINTEVIDMTFIDESLMSELCERFDIQSISLLKSKLIQLYDEISDXNLIIHALYTLIMIQEYKNEMMFLLITHLNQHKIIIENLXLKRNQILIDSANDQLISSLKIQTSKSVVLKASSQLAFYRSESNKICKMKQKNLNLIVTSMIILKRFLNQKSVNKFIESAQFIESTLIAKQST |
| Ga0272438_100068432 | F065269 | N/A | VSIAHYDFQNVKRESLLSQNRTASEEENMNALSDTEEENMNVLLFDHEMIKISISTELNA |
| Ga0272438_100068434 | F048018 | N/A | MTLSXVSXMIXRHSLSELSMYFLSXKYRXFLCFSHSTRKILLXCRASLQSTLIIXAANLSLISICFHNVXVKVSAESSSRFKVSXFSXNLMFSTSNSSISKFVRAKICKDAEITENKCNXTESRMMICDXSFMTLMLKMSRVRFSTISRFKT |
| Ga0272438_100068435 | F020121 | GAG | MKKLIEHLCDEMFIAQIIYEFNVNLSYHSCFKYFIEDEIXLNACNLSIVHLVVKLNDYNINFFKIKCVFVNNSLIIKLNLSAFMKIHSIFHVILLSHIASDSLLNQHQKSQELIIIKNDERFXYVNSILNFKHDKCYNSSLLKYYVDXENHFSTXKSFHLLNNYEQILNEYHLVNSVVEESHVLSCVMSQCQCQEL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |