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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1000691 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 51092 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (12.96%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F023763 | Metagenome | 208 | Y |
| F028978 | Metagenome | 189 | Y |
| F040408 | Metagenome | 161 | Y |
| F046102 | Metagenome | 151 | Y |
| F064254 | Metagenome | 128 | Y |
| F094622 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100069110 | F064254 | N/A | MLVKSIIXMIVVITLMISKSFLKFMMFSLHCIIFHSIFHLEHVNKMCLINIXSLLHLYIVVTTLSTRLSCKNXLKSIFLMRNCVNNALXDFAXFLCSYRCXCIISDVRYXKXAALNLFFQTTLHVCLICFCMNVNLIITSMH |
| Ga0272438_100069111 | F094622 | N/A | MFALKQKVYLNDSNSKDDVTAIMMKMNXKLDKRLRELALVIIHHDELKELVAKVKHFADVMTVNQEYHEKIYKVYNDSQTSLKIMKVMISTKDQTRLQXV |
| Ga0272438_100069117 | F046102 | N/A | MSSSNDFFVSKSLTIKCVLSSNKISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIRKFDDHYAKKLIIHAIYSNLTVQDYMKCFVFMLITXLDQHQMILEKTXMNKIKMTINMKDDYLQFSSFKTHIKAFIKAHSTVLSSKKIAIEQKSSIFT |
| Ga0272438_100069121 | F028978 | N/A | MKIADLKEKENDKSIYQLILEVNKINKNCILLHEVMLKDEAQYKDIKLKDCRVQNEILYQDDLLXVFFNEHL |
| Ga0272438_100069126 | F023763 | N/A | MLILISRIECILLFRKIFXVTRQSIQLIIDLVEIISDVIVEFKQKFTSISLMMIQLLNXHEILKIFVIQNHLNRIDKVFKLXLSFLKCINNDYKFFIINFVVTLDXVMLLXKVSDXIKNLVLIILKENVFEYIVXSIDFYHNLVIXITMMKNNFKSEDFLKNVECNLTFLKLNKKYIFSDETSEQSSYFTIVINESFIKVREI |
| Ga0272438_100069132 | F001951 | GAG | MKLKFIDSLKNEKEKDKDTVETTVTKMIIFELKELLVNVKIFLTLMNEMMMKMKXD |
| Ga0272438_100069149 | F040408 | N/A | MYDYESIFNIYIENNAIKEEVSVVKEHVEMLQDVQNTLM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |