NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000712

Scaffold Ga0272438_1000712


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000712 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50484
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (14.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011463Metagenome290Y
F035571Metagenome171Y
F044227Metagenome154Y
F096306Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100071216F096306AGAAGMYDNYAVDSFIVDDDFNEERSCRNNSELHASMILFDITTLIVTNIKIIFVESNDK
Ga0272438_100071221F035571GAGMTXLTLVKRTCISLHACLIFYVQLLTQLCNVILFCNMFKXTCSKLMYVSVFKVSMLTLLNASATXHRIXFXSVSSLHSLLNNSSFLSRXYQIDTSNAISDLITAEYTYFTFVKIAFHVKTSRXLSVSILVTXFIFICXRCASYHSFMFSCTSRICMFDFDLIIEFFIYMLVIMLNLFDFLVKCVSSYFSDANVASXVQAHFA
Ga0272438_100071230F011463N/AMQNDXVKXLFMIKFSENFNIFSIILMTSFYFNKDFHLXMKEFLIFNHQQLKKTKQIIEAQINKHRXDIIYEVKNXVXLFFRNIKTTKSCKNLKDKQLEFYQITVKVEIFYHLCLLISMKQLHLIFSLKLLNSYFNGFLSKKHSKSFKFLTIKDDEHXKINDILNFKCYXDQIQYKVKXTELNQDNKXYYVNKEKFNDFKDVLIKFYKY
Ga0272438_10007126F044227N/AMMXLQMKLSDDEACTYALLELIASAIKNATRCXLLELLNNNHHHEESQSSSKNDDENEVFKAI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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