 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1000718 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 50211 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (12.73%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F009580 | Metagenome | 315 | Y |
| F020121 | Metagenome | 225 | Y |
| F023763 | Metagenome | 208 | Y |
| F036036 | Metagenome | 170 | Y |
| F070711 | Metagenome | 122 | Y |
| F071806 | Metagenome | 121 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100071819 | F036036 | N/A | MFISLIYYLFSCFDQSFMSENQCLVYLFRYILDSINLQTFVSAFILNDVKVEAHTRMKALVHEEEDQEDNXXQDVIINKLNYK |
| Ga0272438_100071823 | F009580 | N/A | VKRLKLVDKIICIQISEHDLAQKLNFFHEQRDFFVYTDDVTIVNVHDMQSEELLIXAFFNDFAXMLQFAVVTQLSLVTDFLNLKNDQNLILNDDNDKV |
| Ga0272438_100071825 | F023763 | N/A | MSFQNCLMLILISRIKCISLFKEIFXAICQSIQLIVDFVKMINDVIVEFRQKLTSTSLITTQLLNXHEILKIFVIHDHLNKVNKVFKLXSSFLESANNDHKFFIIDFVVTLDXVMLLQKVSDXMKNLVLIVLKENIFKHIVXNIDFYHNLVIXIIVTKNNLESKDFLKNVECNLTFLKLNKEYIFSDEMSEQNSYFTIVINESSIKVREI |
| Ga0272438_100071826 | F071806 | N/A | MKLQSQIITLDSVQLHLFSIISASLQILTLMNLEIEEFNVENIKSQLNQDILNLNENFADILIQTL |
| Ga0272438_100071828 | F020121 | GAG | MKKLTEHLCDKMLIAQIIYKFNINLFHRSCSKYFVKDEVXLNAYNLNIAHFTIKLNDHNVDLFKIKRVFKNNSLIIELNLSIFMKIYSIFHVILLNHITSDFLSSQRQKFXELVIIKNNERFXYINSILNFKHDRYYNSSLLKYYINXKDHFFTXESFYLLNNCEQVFNEYYLVNSVIKKSHVLSCVMSQCQYQEL |
| Ga0272438_100071831 | F000597 | N/A | MKDVLISSMTSMSNNSFASKSLTIECVLSSNKISYSLKSLIDIEAADYSFIDEVIAQIVCNQLQIKSLTLIKAKSIQEFNDHYAKKFITHVIYSNLTVQDHMIDTAFMLITXLN |
| Ga0272438_10007188 | F070711 | N/A | MLNDSFTSESLTIECILSSNEISYSLKLLIDIEAANYLFINEVTAQIVYN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |