NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000735

Scaffold Ga0272438_1000735


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000735 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49472
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (53.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F055319Metagenome138Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100073510F055319AGCAGMIEVRVKRLKLINKMICIQIFERDLAQKLNFSCKQQDFFIYIDDVIVVDVHDTQSEKLLI
Ga0272438_100073511F001951GAGMMTMTKLKFINSSRNKRERDEDIVETTVTEVMIFESQELLINVKMFLTLINETMMKMK
Ga0272438_100073512F087980N/AMKSSYNFLINDEHVVEQFAQSMIENSVKIFHTMYELQNQVQQHDVITSFLFIVFSSSVYIKLNSQSFVMIAQIITQILNNQSFFIVHLSANFVIVFITFRFEKLLDISEYERNKD
Ga0272438_10007354F021896N/AMMKNNLESEDFFKNVECNLIFLKSDKEYIFSDEMNERSSYSTIVIDESFIEVREI
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