NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272438_1000766

Scaffold Ga0272438_1000766


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000766 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48385
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (22.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011463Metagenome290Y
F028367Metagenome191Y
F033265Metagenome177Y
F052973Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10007662F052973AGAAGLIQKAFIYVMFRDCAKFEKNVFVTXKECDVDEQDVDERKECXERKKILSHIXIKFD
Ga0272438_100076640F011463N/AMRSCKDLKDKQLELYQITIKAKVFYHLHLSISMKHLHLMFSSKLLQLYSEDLLSEQHVESFRLIIIDDDDDEHXKINDILNFRCYQDQIQYKIKXKDLDKDNEXYYVDKDEFNDFKKVLNEFHALYSRKSR
Ga0272438_100076641F033265N/AMFHVIEETMTSQLKKXFESCCETFINCMIYSVLLFQTETFNLYQLCEKVFASDXESQLVYSLSIIQRSMIRRNVSIKILNVNLEFTAITCRTTESNEYLXXNSATISISSXSSQXLLSTSIKIFTLEXVLIQIQLTMKSFVNDXRLEKQMILSFKXKSYXALIINNXKRRSXSLKHRXINIDETSFMR
Ga0272438_100076644F028367N/AMTSLFKLDKILLKENYFEKSFLIDAHLILQNQFFNLCSLINSDSVAHTLIHANLVNKVCKKLEIQSILLTKEKLIRDYDEKIFKKIITHKILFNFIIESYKKLTVSMLIADINHHELILSKLXMNKNEILLNMXNNVIVFLNQLNTFISIFSISLNSKHSSXSRSTSSSSITQTKIFMMLKRLISITAQKELFSI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.