NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000800

Scaffold Ga0272438_1000800


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000800 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47272
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (12.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036035Metagenome170Y
F051591Metagenome143Y
F065268Metagenome127Y
F075493Metagenome118Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100080016F094622N/AMFTLKQRIYLNDNNSRNDVTVIMMRMNXKLNKRLRESTLVITHHDELKKLIARAKHFADVMIMNQEYYEKIYKVYNDSQTFLKTVKAMISIKDQTRLQXVQIAHESI
Ga0272438_100080018F036035N/AMKDRTKDDAMQRKHHKLEKASRNHEHNDSDHLNDTFNKHTELISDCNIIKESNERKKK
Ga0272438_100080028F065268N/AMIRSTESESVSIACYNFQNVRRESLLSQNQAASEEEKGMNAMSNTEEENMNALFFVYEMIKISINEELNAXITANEADDLIIFIKYIC
Ga0272438_100080045F075493AGCAGMLHRLMTSFAVTSQAIHAXNVSRVQIFIQIYMLNSDVHCKSAFCFLKIITHLYHLIAQMQSLCXDCVDICNAFSVLFSSLISLIFVILRYCDAIACXNHCEKENVSSASXLYLCIFLNEDIQKYYFLDDEXVRNDAINSRQASAY
Ga0272438_100080048F051591N/AMYQSSYIISLRIVMTDLDLLSCASRKGKTNSDLIRNAVLLXNNVVFYAIFKCKRVRFRFLHQYAVFCAVLKSIDDLFFSCEFALXFISQITVXLDDSFFYVDELSFRRRFXSAXAXKISIFDFXLATQSSVKLLSRMRACFNHMIVLYNLLIDLIFMSSQXLCLMX
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