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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1000869 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 45217 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (14.29%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F020121 | Metagenome | 225 | Y |
| F038009 | Metagenome | 166 | Y |
| F040408 | Metagenome | 161 | Y |
| F044227 | Metagenome | 154 | Y |
| F076668 | Metagenome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100086911 | F044227 | N/A | MMQLQIKSSNDEACIYALLELIASAIKNVTRYXLLKLLNNHYYHEEFQSSNKDDDANEALKAI |
| Ga0272438_100086912 | F020121 | GAG | MLIAQIIYEFNVNLSHCSCSRYFIEDKVXLNACNFNITRLVVKLDDHNVDLFKIKRVFKNNSLIIELNLSAFMKIHSIFHVTLLNHITSDFLSNQHQKSQELIIVKNNERFXYVNSILNFKYDKHYNSSLLKYYINXKDHFFTXESFHLLNNCEQALDEYHLVNSVVKESHVLSCVMSQCQC |
| Ga0272438_100086915 | F038009 | GAG | MIKALNSQLDYVKLYRRSIELICSRNNRSFRKKRILTLDFXXVFFLNDLKNTTRSFLFQTKDKIERVLSSVNELSINXLFVSERRVILLLVSRXKTELLLVSELRTELLLVSKLKTELLLLSEXETRLLLASKLKTELLLSSE |
| Ga0272438_10008692 | F008735 | N/A | VSLLIYDESXLNINNLDSMKEIMIVIHVHALYQTLLSCIQSIFIFLIFKYVEKLLESRSDKDSNKVCRKMNDKKRLIIQDLCDDLSYHHKKLRIQLYINXRTENDKXEQDDDIMLLNLILKLLHYAKDLDXIFNYTLSKLFNSMLIVNQEIVKXLHLSERITRXDFNVXKRCRKCKSFIMSETELN |
| Ga0272438_100086927 | F040408 | N/A | MYDYKSIFDIHIENDAIKEKVSAAKKRVEMLQNVQNTLMQ |
| Ga0272438_10008693 | F001951 | N/A | MMIMTELRFIDSSKDEKERDKDTVETTVTEVMIFEFKKLLVDAKMLLTLMNKMIMKMKQD |
| Ga0272438_100086939 | F076668 | N/A | MTCLLLTSXFLACESVHKRLMNSNNNYAIKETISVFAFIKKIMHMNNALLIDMLMLCNRKLKDATNQKXSHCVRFENIRSQLKISFLKXSLNDLXERLCTTVLAQICYHTIIAFSALSXVLFKKSLKTLCASLXKVSALLFHIITFVVEFSLIFCFMQTSTXQQFMSNASSFKIEIXNLXRISX |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |